Length: 2,256 (bp)
RPKM (DHA_bulb): 38.68
Reference | Bulb | Root | Leaf | Stem | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
DHA_Bulb | F1 | A.roylei | DHA | F1 | A.roylei | DHC | DHA | F1 | A.roylei | FF | FF+5A |
38.68 | 36.65 | 41.48 | 32.46 | 40.57 | 54.89 | 14.17 | 27.09 | 11.75 | 5.90 | 44.83 | 19.83 |
chromosome addition lines
FF1A | FF2A | FF3A | FF4A | FF5A | FF6A | FF7A | FF8A | AA | FF | |
---|---|---|---|---|---|---|---|---|---|---|
Bulb | 19.75 | 26.73 | 24.16 | 25.62 | 34.77 | 28.32 | 24.15 | 26.88 | 30.25 | 31.8 |
Root | 46.78 | 38.69 | 33.68 | 30.37 | 67.25 | 40.88 | 35.55 | 32.12 | 32.82 | 43.25 |
Leaf | 9.8 | 10.35 | 10.81 | 13.71 | 10 | 12.28 | 15.78 | 9.72 | 7.82 | 9.21 |
DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
---|---|---|---|---|---|---|
TAIR | AT3G51950.2 | 39.9 | 51.1 | 314 | 2e-85 | | Symbols: | Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | chr3:19278244-19280407 REVERSE LENGTH=540 |
IRGSP | Os07t0682400-03 | 43.9 | 52.3 | 449 | 1e-126 | Nucleotide-binding, alpha-beta plait domain containing protein. |
nr | emb|CBI28616.3| | 47.8 | 56.5 | 461 | 1e-127 | unnamed protein product [Vitis vinifera] |
DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
---|---|---|---|---|---|---|
DHC_Leaf | CL5601.Contig1_DHC_Leaf | 99.7 | 99.7 | 4246 | 0.0 | size 2174 |
DHA_Leaf | CL428.Contig3_DHA_Leaf | 99.9 | 99.9 | 4397 | 0.0 | size 2239 |
F1_Leaf | Unigene25371_F1_Leaf | 99.9 | 99.9 | 1558 | 0.0 | size 844 |
A.roylei_Leaf | CL3089.Contig2_A.roylei_Leaf | 98.5 | 98.5 | 1396 | 0.0 | size 748 |
F1_Bulb | CL295.Contig1_F1_Bulb | 99.6 | 99.6 | 2000 | 0.0 | size 1060 |
A.roylei_Bulb | CL1427.Contig4_A.roylei_Bulb | 98.9 | 98.9 | 1850 | 0.0 | size 1058 |
DHA_Root | Unigene31331_DHA_Root | 97.0 | 97.0 | 2575 | 0.0 | size 2290 |
F1_Root | CL1793.Contig5_F1_Root | 99.9 | 99.9 | 4339 | 0.0 | size 2249 |
A.roylei_Root | CL1282.Contig2_A.roylei_Root | 98.8 | 98.8 | 4195 | 0.0 | size 2279 |
FFStem | Unigene28903_FFStem | 97.9 | 97.9 | 1481 | 0.0 | size 819 |
FF_5AStem | Unigene28837_FF_5AStem | 98.5 | 98.5 | 1503 | 0.0 | size 810 |
GI_kazusaEST | CF437730 | 99.5 | 99.5 | 1501 | 0.0 | similar to UniRef100_Q10M00 Cluster: Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed; n=1; Oryza sativa Japonica Group|Rep: Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed - Oryza sativa subsp. japonica (Rice), partial (12%) |
A.fistulosum_Unigene | AFU_01013 | 98.1 | 98.1 | 3981 | 0.0 |