Sequence

CL7.Contig3_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
2.82 2.40 1.32 6.23 3.41 1.20 1.08 3.52 2.13 1.82 0.00 0.48

FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 0.07 0.49 0.21 0.13 0.52 0 0.09 0.17 5.02 0.47
Root 0.09 0.16 0.15 0.19 0.21 0 0.11 0 4.19 0.08
Leaf 0.15 0.34 0.23 0.22 0.37 0.08 0.2 0.19 1.51 0.09

BLAST

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
TAIR --No_Hits--
IRGSP --No_Hits--
nr --No_Hits--


Corresponding unigene

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
DHC_Leaf CL4186.Contig1_DHC_Leaf 94.6 94.6 400 1e-111 size 258
DHA_Leaf Unigene28040_DHA_Leaf 99.6 99.6 505 1e-143 size 260
F1_Leaf CL1869.Contig8_F1_Leaf 94.8 94.8 450 1e-126 size 653
A.roylei_Leaf Unigene274_A.roylei_Leaf 91.9 91.9 317 2e-86 size 900
F1_Bulb Unigene13625_F1_Bulb 100.0 100.0 297 2e-80 size 150
A.roylei_Bulb CL614.Contig2_A.roylei_Bulb 91.5 91.5 309 6e-84 size 823
DHA_Root CL6968.Contig1_DHA_Root 94.8 94.8 450 1e-126 size 735
F1_Root Unigene818_F1_Root 97.4 97.4 337 3e-92 size 427
A.roylei_Root CL3305.Contig6_A.roylei_Root 91.5 91.5 309 6e-84 size 754
FFStem Unigene25399_FFStem 87.5 87.5 190 4e-48 size 199
FF_5AStem Unigene8987_FF_5AStem 88.7 88.7 165 2e-40 size 217
GI_kazusaEST CF436182 87.3 87.3 276 3e-74 similar to UniRef100_A9RZW7 Cluster: Predicted protein; n=1; Physcomitrella patens subsp. patens|Rep: Predicted protein - Physcomitrella patens subsp. patens, partial (14%)
A.fistulosum_Unigene AFU_25512 97.1 97.1 242 3e-63


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