Sequence

CL7.Contig1_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
49.19 41.66 43.73 51.42 53.39 41.82 24.75 38.04 34.83 20.88 39.43 19.95

FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 26.6 24.5 37.98 32.32 28.46 34.52 34.35 32.36 37.87 29.82
Root 20.11 23.99 31.77 21.32 18.5 18.85 20.06 18.82 35.37 24.4
Leaf 5.34 8.55 12.45 11.18 11.35 15 13.33 6.57 28.33 9.51

BLAST

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
TAIR AT5G53400.1 63.7 74.5 278 4e-75 | Symbols: BOB1 | HSP20-like chaperones superfamily protein | chr5:21661588-21663383 FORWARD LENGTH=304
IRGSP Os06t0231300-01 77.8 88.3 300 1e-81 CS domain domain containing protein.
nr gb|ACN25640.1| 71.3 84.2 304 3e-80 unknown [Zea mays]


Corresponding unigene

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
DHC_Leaf CL4186.Contig2_DHC_Leaf 99.8 99.8 1939 0.0 size 1076
DHA_Leaf CL4603.Contig1_DHA_Leaf 100.0 100.0 1124 0.0 size 1210
F1_Leaf CL1869.Contig2_F1_Leaf 99.2 99.2 1875 0.0 size 996
A.roylei_Leaf Unigene25722_A.roylei_Leaf 98.8 98.8 1068 0.0 size 1169
F1_Bulb Unigene993_F1_Bulb 99.8 99.8 1116 0.0 size 1225
A.roylei_Bulb Unigene28668_A.roylei_Bulb 98.8 98.8 1068 0.0 size 1177
DHA_Root CL385.Contig3_DHA_Root 99.8 99.8 2173 0.0 size 1194
F1_Root Unigene23377_F1_Root 100.0 100.0 1176 0.0 size 596
A.roylei_Root CL4950.Contig2_A.roylei_Root 98.8 98.8 1068 0.0 size 1175
FFStem Unigene23324_FFStem 97.5 97.5 1007 0.0 size 1211
FF_5AStem Unigene13809_FF_5AStem 97.7 97.7 1015 0.0 size 1156
GI_kazusaEST CF436182 99.8 99.8 1124 0.0 similar to UniRef100_A9RZW7 Cluster: Predicted protein; n=1; Physcomitrella patens subsp. patens|Rep: Predicted protein - Physcomitrella patens subsp. patens, partial (14%)
A.fistulosum_Unigene AFU_08133 97.7 97.7 1015 0.0


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