AlliumTDB
[DHA_Bulb] CL5.Contig1_DHA_Bulb
Sequence
Expression profile
RPKM (Reads Per Kilobase of exon per Million mapped reads)
Length: 327 (bp)
RPKM (DHA_bulb): 18.66
| Reference | Bulb | Root | Leaf | Stem | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| DHA_Bulb | F1 | A.roylei | DHA | F1 | A.roylei | DHC | DHA | F1 | A.roylei | FF | FF+5A |
| 18.66 | 11.87 | 0.00 | 6.16 | 26.09 | 0.00 | 0.00 | 6.76 | 4.43 | 0.00 | 0.00 | 0.00 |
chromosome addition lines
| FF1A | FF2A | FF3A | FF4A | FF5A | FF6A | FF7A | FF8A | AA | FF | |
|---|---|---|---|---|---|---|---|---|---|---|
| Bulb | 0 | 0 | 0 | 0 | 0 | 0.06 | 0 | 2.47 | 12.77 | 0 |
| Root | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.27 | 5.74 | 0 |
| Leaf | 0 | 0.07 | 0 | 0 | 0 | 0 | 0 | 3.84 | 0.53 | 0 |
BLAST
| DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
|---|---|---|---|---|---|---|
| TAIR | --No_Hits-- | |||||
| IRGSP | --No_Hits-- | |||||
| nr | --No_Hits-- |
Corresponding unigene
| DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
|---|---|---|---|---|---|---|
| DHC_Leaf | --No_Hits-- | |||||
| DHA_Leaf | Unigene6943_DHA_Leaf | 100.0 | 100.0 | 446 | 1e-125 | size 225 |
| F1_Leaf | Unigene6384_F1_Leaf | 100.0 | 100.0 | 446 | 1e-125 | size 225 |
| A.roylei_Leaf | --No_Hits-- | |||||
| F1_Bulb | Unigene7211_F1_Bulb | 100.0 | 100.0 | 426 | 1e-119 | size 215 |
| A.roylei_Bulb | --No_Hits-- | |||||
| DHA_Root | CL4587.Contig1_DHA_Root | 100.0 | 100.0 | 545 | 1e-155 | size 275 |
| F1_Root | Unigene16069_F1_Root | 100.0 | 100.0 | 644 | 0.0 | size 361 |
| A.roylei_Root | --No_Hits-- | |||||
| FFStem | --No_Hits-- | |||||
| FF_5AStem | --No_Hits-- | |||||
| GI_kazusaEST | --No_Hits-- | |||||
| A.fistulosum_Unigene | AFU_77549 | 86.8 | 86.8 | 71.9 | 6e-12 |
