Length: 1,813 (bp)
RPKM (DHA_bulb): 3.61
Reference | Bulb | Root | Leaf | Stem | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
DHA_Bulb | F1 | A.roylei | DHA | F1 | A.roylei | DHC | DHA | F1 | A.roylei | FF | FF+5A |
3.61 | 4.33 | 3.01 | 3.44 | 2.33 | 2.06 | 11.71 | 2.59 | 3.65 | 2.47 | 1.70 | 1.30 |
chromosome addition lines
FF1A | FF2A | FF3A | FF4A | FF5A | FF6A | FF7A | FF8A | AA | FF | |
---|---|---|---|---|---|---|---|---|---|---|
Bulb | 1.57 | 1.9 | 1.53 | 1.82 | 1.38 | 2.14 | 1.64 | 1.97 | 7.57 | 2.23 |
Root | 1.82 | 2.33 | 1.84 | 2.91 | 1.96 | 1.86 | 2.17 | 1.67 | 4.02 | 2.54 |
Leaf | 1.09 | 1.48 | 1.09 | 2.8 | 2.14 | 1.21 | 1.72 | 0.81 | 5.08 | 1.25 |
DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
---|---|---|---|---|---|---|
TAIR | AT4G16340.1 | 52.6 | 67.4 | 177 | 2e-44 | | Symbols: SPK1 | guanyl-nucleotide exchange factors;GTPase binding;GTP binding | chr4:9228773-9241060 REVERSE LENGTH=1830 |
IRGSP | Os01t0897300-02 | 58.7 | 78.7 | 94.7 | 2e-19 | Ribonuclease T2 family protein. |
nr | gb|EOY02226.1| | 68.9 | 77.7 | 207 | 4e-77 | Guanyl-nucleotide exchange factors,GTPase binding,GTP binding isoform 2 [Theobroma cacao] |
DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
---|---|---|---|---|---|---|
DHC_Leaf | CL3918.Contig2_DHC_Leaf | 94.9 | 94.9 | 1407 | 0.0 | size 1596 |
DHA_Leaf | CL6835.Contig3_DHA_Leaf | 99.1 | 99.1 | 3114 | 0.0 | size 1888 |
F1_Leaf | CL3529.Contig1_F1_Leaf | 98.6 | 98.6 | 1675 | 0.0 | size 1312 |
A.roylei_Leaf | CL4523.Contig2_A.roylei_Leaf | 95.1 | 95.1 | 888 | 0.0 | size 668 |
F1_Bulb | Unigene25586_F1_Bulb | 99.7 | 99.7 | 1415 | 0.0 | size 1431 |
A.roylei_Bulb | CL4790.Contig2_A.roylei_Bulb | 98.8 | 98.8 | 938 | 0.0 | size 772 |
DHA_Root | CL3487.Contig2_DHA_Root | 98.3 | 98.3 | 1520 | 0.0 | size 823 |
F1_Root | Unigene20282_F1_Root | 99.6 | 99.6 | 1070 | 0.0 | size 1044 |
A.roylei_Root | CL2947.Contig2_A.roylei_Root | 97.6 | 97.6 | 807 | 0.0 | size 534 |
FFStem | Unigene29113_FFStem | 96.5 | 96.5 | 862 | 0.0 | size 1121 |
FF_5AStem | CL4690.Contig2_FF_5AStem | 96.5 | 96.5 | 862 | 0.0 | size 1064 |
GI_kazusaEST | CF435122_e | 99.4 | 99.4 | 916 | 0.0 | |
A.fistulosum_Unigene | AFU_10862 | 97.1 | 97.1 | 827 | 0.0 |