Sequence

CL4.Contig5_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
3.61 4.33 3.01 3.44 2.33 2.06 11.71 2.59 3.65 2.47 1.70 1.30

FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 1.57 1.9 1.53 1.82 1.38 2.14 1.64 1.97 7.57 2.23
Root 1.82 2.33 1.84 2.91 1.96 1.86 2.17 1.67 4.02 2.54
Leaf 1.09 1.48 1.09 2.8 2.14 1.21 1.72 0.81 5.08 1.25

BLAST

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
TAIR AT4G16340.1 52.6 67.4 177 2e-44 | Symbols: SPK1 | guanyl-nucleotide exchange factors;GTPase binding;GTP binding | chr4:9228773-9241060 REVERSE LENGTH=1830
IRGSP Os01t0897300-02 58.7 78.7 94.7 2e-19 Ribonuclease T2 family protein.
nr gb|EOY02226.1| 68.9 77.7 207 4e-77 Guanyl-nucleotide exchange factors,GTPase binding,GTP binding isoform 2 [Theobroma cacao]


Corresponding unigene

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
DHC_Leaf CL3918.Contig2_DHC_Leaf 94.9 94.9 1407 0.0 size 1596
DHA_Leaf CL6835.Contig3_DHA_Leaf 99.1 99.1 3114 0.0 size 1888
F1_Leaf CL3529.Contig1_F1_Leaf 98.6 98.6 1675 0.0 size 1312
A.roylei_Leaf CL4523.Contig2_A.roylei_Leaf 95.1 95.1 888 0.0 size 668
F1_Bulb Unigene25586_F1_Bulb 99.7 99.7 1415 0.0 size 1431
A.roylei_Bulb CL4790.Contig2_A.roylei_Bulb 98.8 98.8 938 0.0 size 772
DHA_Root CL3487.Contig2_DHA_Root 98.3 98.3 1520 0.0 size 823
F1_Root Unigene20282_F1_Root 99.6 99.6 1070 0.0 size 1044
A.roylei_Root CL2947.Contig2_A.roylei_Root 97.6 97.6 807 0.0 size 534
FFStem Unigene29113_FFStem 96.5 96.5 862 0.0 size 1121
FF_5AStem CL4690.Contig2_FF_5AStem 96.5 96.5 862 0.0 size 1064
GI_kazusaEST CF435122_e 99.4 99.4 916 0.0
A.fistulosum_Unigene AFU_10862 97.1 97.1 827 0.0


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