Length: 2,072 (bp)
RPKM (DHA_bulb): 3.92
Reference | Bulb | Root | Leaf | Stem | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
DHA_Bulb | F1 | A.roylei | DHA | F1 | A.roylei | DHC | DHA | F1 | A.roylei | FF | FF+5A |
3.92 | 4.32 | 3.40 | 2.77 | 1.78 | 2.38 | 10.47 | 2.45 | 3.15 | 2.68 | 1.65 | 1.32 |
chromosome addition lines
FF1A | FF2A | FF3A | FF4A | FF5A | FF6A | FF7A | FF8A | AA | FF | |
---|---|---|---|---|---|---|---|---|---|---|
Bulb | 2.24 | 2.11 | 2.2 | 2.46 | 1.76 | 2.18 | 2.34 | 2.05 | 6.27 | 2.42 |
Root | 1.82 | 2.39 | 1.79 | 3.03 | 2.1 | 1.74 | 2.34 | 1.79 | 3.6 | 2.65 |
Leaf | 1 | 1.6 | 1.02 | 2.85 | 2.06 | 1.57 | 1.54 | 1.19 | 4.36 | 1.25 |
DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
---|---|---|---|---|---|---|
TAIR | AT4G16340.1 | 52.3 | 67.2 | 176 | 5e-44 | | Symbols: SPK1 | guanyl-nucleotide exchange factors;GTPase binding;GTP binding | chr4:9228773-9241060 REVERSE LENGTH=1830 |
IRGSP | Os01t0897300-02 | 58.7 | 78.7 | 94.7 | 2e-19 | Ribonuclease T2 family protein. |
nr | gb|EOY02226.1| | 68.7 | 77.6 | 205 | 1e-76 | Guanyl-nucleotide exchange factors,GTPase binding,GTP binding isoform 2 [Theobroma cacao] |
DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
---|---|---|---|---|---|---|
DHC_Leaf | CL3918.Contig2_DHC_Leaf | 96.3 | 96.3 | 1076 | 0.0 | size 1596 |
DHA_Leaf | CL6835.Contig3_DHA_Leaf | 99.2 | 99.2 | 3017 | 0.0 | size 1888 |
F1_Leaf | CL3529.Contig1_F1_Leaf | 98.6 | 98.6 | 1675 | 0.0 | size 1312 |
A.roylei_Leaf | CL4523.Contig2_A.roylei_Leaf | 95.1 | 95.1 | 888 | 0.0 | size 668 |
F1_Bulb | Unigene25586_F1_Bulb | 99.7 | 99.7 | 1415 | 0.0 | size 1431 |
A.roylei_Bulb | CL4790.Contig2_A.roylei_Bulb | 99.2 | 99.2 | 952 | 0.0 | size 772 |
DHA_Root | CL3487.Contig2_DHA_Root | 98.5 | 98.5 | 1536 | 0.0 | size 823 |
F1_Root | Unigene20282_F1_Root | 99.6 | 99.6 | 1070 | 0.0 | size 1044 |
A.roylei_Root | CL2947.Contig2_A.roylei_Root | 97.6 | 97.6 | 807 | 0.0 | size 534 |
FFStem | Unigene29113_FFStem | 96.5 | 96.5 | 862 | 0.0 | size 1121 |
FF_5AStem | CL4690.Contig2_FF_5AStem | 96.5 | 96.5 | 862 | 0.0 | size 1064 |
GI_kazusaEST | CF435122_e | 99.4 | 99.4 | 916 | 0.0 | |
A.fistulosum_Unigene | AFU_10862 | 97.1 | 97.1 | 827 | 0.0 |