Length: 2,172 (bp)
RPKM (DHA_bulb): 3.78
Reference | Bulb | Root | Leaf | Stem | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
DHA_Bulb | F1 | A.roylei | DHA | F1 | A.roylei | DHC | DHA | F1 | A.roylei | FF | FF+5A |
3.78 | 4.56 | 2.99 | 2.91 | 1.89 | 1.66 | 10.79 | 2.69 | 3.27 | 2.01 | 1.40 | 1.25 |
chromosome addition lines
FF1A | FF2A | FF3A | FF4A | FF5A | FF6A | FF7A | FF8A | AA | FF | |
---|---|---|---|---|---|---|---|---|---|---|
Bulb | 2.08 | 1.82 | 1.82 | 2.3 | 1.74 | 1.94 | 1.87 | 1.75 | 6.89 | 2.23 |
Root | 1.68 | 2 | 1.63 | 2.64 | 1.8 | 1.87 | 1.94 | 1.5 | 3.61 | 2.26 |
Leaf | 1.08 | 1.15 | 1 | 2.41 | 1.89 | 1.53 | 1.62 | 0.97 | 4.68 | 1.2 |
DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
---|---|---|---|---|---|---|
TAIR | AT4G16340.1 | 52.3 | 67.2 | 176 | 6e-44 | | Symbols: SPK1 | guanyl-nucleotide exchange factors;GTPase binding;GTP binding | chr4:9228773-9241060 REVERSE LENGTH=1830 |
IRGSP | Os01t0897300-02 | 58.7 | 78.7 | 94.7 | 2e-19 | Ribonuclease T2 family protein. |
nr | gb|AAN65000.1| | 66.4 | 75.7 | 199 | 1e-90 | Putative adapter protein SPIKE1 [Oryza sativa Japonica Group] |
DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
---|---|---|---|---|---|---|
DHC_Leaf | CL3918.Contig1_DHC_Leaf | 96.4 | 96.4 | 1901 | 0.0 | size 1734 |
DHA_Leaf | CL6835.Contig4_DHA_Leaf | 99.0 | 99.0 | 3186 | 0.0 | size 1991 |
F1_Leaf | CL3529.Contig1_F1_Leaf | 98.3 | 98.3 | 1752 | 0.0 | size 1312 |
A.roylei_Leaf | CL4523.Contig2_A.roylei_Leaf | 95.1 | 95.1 | 888 | 0.0 | size 668 |
F1_Bulb | Unigene25586_F1_Bulb | 99.7 | 99.7 | 1415 | 0.0 | size 1431 |
A.roylei_Bulb | CL4790.Contig2_A.roylei_Bulb | 99.2 | 99.2 | 952 | 0.0 | size 772 |
DHA_Root | CL3487.Contig3_DHA_Root | 98.3 | 98.3 | 1715 | 0.0 | size 1035 |
F1_Root | Unigene20282_F1_Root | 99.6 | 99.6 | 1070 | 0.0 | size 1044 |
A.roylei_Root | CL2947.Contig2_A.roylei_Root | 97.6 | 97.6 | 807 | 0.0 | size 534 |
FFStem | Unigene29113_FFStem | 96.5 | 96.5 | 862 | 0.0 | size 1121 |
FF_5AStem | CL4690.Contig2_FF_5AStem | 96.5 | 96.5 | 862 | 0.0 | size 1064 |
GI_kazusaEST | CF435122_e | 99.4 | 99.4 | 916 | 0.0 | |
A.fistulosum_Unigene | AFU_10862 | 97.1 | 97.1 | 827 | 0.0 |