Sequence

CL2.Contig2_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
13.35 12.84 9.37 10.61 13.31 13.33 9.84 15.71 13.80 5.56 16.97 18.74

FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 12.31 11.51 11.42 13.6 17.09 13.13 14.29 12.76 11.54 15.79
Root 16.13 14.04 14.84 15.53 26.94 13.08 19.93 14.41 13.2 21.83
Leaf 7.54 7.12 9.64 9.61 10.42 9.59 10.37 8.96 11 7.47

BLAST

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
TAIR AT2G27210.2 94.6 97.8 631 0.0 | Symbols: BSL3 | BRI1 suppressor 1 (BSU1)-like 3 | chr2:11630188-11636182 FORWARD LENGTH=1001
IRGSP Os03t0646900-01 96.8 98.7 642 0.0 Similar to Serine/threonine protein phosphatase.
nr tpg|DAA54714.1| 96.8 98.4 642 0.0 TPA: putative kelch repeat-containing protein containing ser/thr protein kinase family protein [Zea mays]


Corresponding unigene

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
DHC_Leaf Unigene28329_DHC_Leaf 100.0 100.0 1263 0.0 size 1021
DHA_Leaf Unigene29505_DHA_Leaf 100.0 100.0 1612 0.0 size 1196
F1_Leaf Unigene27332_F1_Leaf 100.0 100.0 1883 0.0 size 2268
A.roylei_Leaf CL5354.Contig1_A.roylei_Leaf 98.8 98.8 779 0.0 size 416
F1_Bulb CL4985.Contig3_F1_Bulb 100.0 100.0 1883 0.0 size 2484
A.roylei_Bulb Unigene26511_A.roylei_Bulb 98.7 98.7 1788 0.0 size 1834
DHA_Root Unigene31727_DHA_Root 99.8 99.8 1249 0.0 size 1018
F1_Root CL996.Contig1_F1_Root 83.3 83.3 622 1e-178 size 3523
A.roylei_Root CL7237.Contig1_A.roylei_Root 98.6 98.6 1229 0.0 size 1033
FFStem Unigene6797_FFStem 98.6 98.6 1768 0.0 size 945
FF_5AStem CL2880.Contig1_FF_5AStem 98.4 98.4 1197 0.0 size 1028
GI_kazusaEST TC7686 99.7 99.7 1187 0.0 homologue to UniRef100_A2ZMT0 Cluster: Serine/threonine protein phosphatase; n=1; Oryza sativa Indica Group|Rep: Serine/threonine protein phosphatase - Oryza sativa subsp. indica (Rice), partial (39%)
A.fistulosum_Unigene AFU_44467 98.6 98.6 1780 0.0


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