Length: 731 (bp)
RPKM (DHA_bulb): 11.39
Reference | Bulb | Root | Leaf | Stem | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
DHA_Bulb | F1 | A.roylei | DHA | F1 | A.roylei | DHC | DHA | F1 | A.roylei | FF | FF+5A |
11.39 | 9.64 | 16.14 | 11.90 | 16.23 | 24.76 | 25.84 | 15.64 | 17.70 | 19.75 | 15.22 | 15.93 |
chromosome addition lines
FF1A | FF2A | FF3A | FF4A | FF5A | FF6A | FF7A | FF8A | AA | FF | |
---|---|---|---|---|---|---|---|---|---|---|
Bulb | 15.02 | 9.24 | 8.2 | 7.71 | 7.79 | 7.63 | 7.53 | 5.55 | 13.04 | 10.39 |
Root | 23.93 | 13.97 | 12.65 | 12.73 | 22.79 | 15.86 | 12.02 | 11.77 | 13.87 | 17.92 |
Leaf | 15.87 | 23.07 | 17.81 | 17.73 | 19.93 | 18.6 | 22.79 | 16.09 | 31.83 | 13.57 |
DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
---|---|---|---|---|---|---|
TAIR | AT2G35680.1 | 50.3 | 65.6 | 152 | 2e-37 | | Symbols: | Phosphotyrosine protein phosphatases superfamily protein | chr2:14997004-14998590 REVERSE LENGTH=337 |
IRGSP | Os10t0561900-04 | 53.2 | 67.2 | 195 | 3e-50 | Similar to Protein-tyrosine phosphatase mitochondrial 1. |
nr | ref|NP_001065390.1| | 53.2 | 67.2 | 195 | 1e-47 | Os10g0561900 [Oryza sativa Japonica Group] gi|13569992|gb|AAK31276.1|AC079890_12 unknown protein [Oryza sativa Japonica Group] gi|31433516|gb|AAP55021.1| Dual specificity phosphatase, catalytic domain containing protein, expressed [Oryza sativa Japonica Group] gi|113639922|dbj|BAF27227.1| Os10g0561900 [Oryza sativa Japonica Group] gi|125532957|gb|EAY79522.1| hypothetical protein OsI_34652 [Oryza sativa Indica Group] gi|125575697|gb|EAZ16981.1| hypothetical protein OsJ_32466 [Oryza sativa Japonica Group] gi|215736902|dbj|BAG95831.1| unnamed protein product [Oryza sativa Japonica Group] |
DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
---|---|---|---|---|---|---|
DHC_Leaf | Unigene26498_DHC_Leaf | 100.0 | 100.0 | 1296 | 0.0 | size 1337 |
DHA_Leaf | CL403.Contig1_DHA_Leaf | 100.0 | 100.0 | 1296 | 0.0 | size 1331 |
F1_Leaf | CL4410.Contig2_F1_Leaf | 100.0 | 100.0 | 1441 | 0.0 | size 729 |
A.roylei_Leaf | CL4984.Contig2_A.roylei_Leaf | 98.9 | 98.9 | 1241 | 0.0 | size 1291 |
F1_Bulb | CL6432.Contig3_F1_Bulb | 100.0 | 100.0 | 1388 | 0.0 | size 700 |
A.roylei_Bulb | CL4303.Contig2_A.roylei_Bulb | 98.9 | 98.9 | 1241 | 0.0 | size 1275 |
DHA_Root | Unigene33320_DHA_Root | 100.0 | 100.0 | 1296 | 0.0 | size 1283 |
F1_Root | CL4547.Contig2_F1_Root | 100.0 | 100.0 | 1441 | 0.0 | size 757 |
A.roylei_Root | CL7069.Contig2_A.roylei_Root | 98.9 | 98.9 | 1241 | 0.0 | size 1319 |
FFStem | CL4490.Contig3_FFStem | 95.4 | 95.4 | 1189 | 0.0 | size 763 |
FF_5AStem | CL6357.Contig2_FF_5AStem | 96.0 | 96.0 | 1219 | 0.0 | size 749 |
GI_kazusaEST | TC7292 | 99.4 | 99.4 | 894 | 0.0 | similar to UniRef100_Q7XC53 Cluster: Dual specificity phosphatase, catalytic domain containing protein, expressed; n=3; Oryza sativa|Rep: Dual specificity phosphatase, catalytic domain containing protein, expressed - Oryza sativa subsp. japonica (Rice), partial (54%) |
A.fistulosum_Unigene | AFU_04320 | 96.2 | 96.2 | 1098 | 0.0 |