Sequence

CL16.Contig1_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
12.94 8.99 19.49 15.24 16.10 33.49 28.05 19.83 20.49 25.59 16.47 16.41

Chromosome addition lines
FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 18.7 14.8 12.41 10.62 12.97 10.58 9.58 7.92 16.38 13.91
Root 34.27 18.78 20.87 19.72 31.6 21.43 17.92 15.88 24.57 28.82
Leaf 23.43 28.77 28.47 26.63 22.32 25.02 27.23 22.78 31.24 18.41
DHA_Fusarium
Control TA AC76
average SD average SD average SD
28.57 0.23 29.66 3.69 28.04 3.04

BLAST

DB AC Iden
(%)		 Posi
(%)		 Score Evalue Annotation
TAIR AT2G35680.1 52.7 67.9 317 1e-86 | Symbols: | Phosphotyrosine protein phosphatases superfamily protein | chr2:14997004-14998590 REVERSE LENGTH=337
IRGSP Os10t0561900-03 58.4 71.6 343 1e-94 Similar to Protein-tyrosine phosphatase mitochondrial 1.
nr gb|EMJ12396.1| 60.0 75.2 347 4e-93 hypothetical protein PRUPE_ppa008400mg [Prunus persica]

Corresponding unigene

DB AC Iden
(%)		 Posi
(%)		 Score Evalue Annotation
DHC_Leaf Unigene26498_DHC_Leaf 100.0 100.0 2488 0.0 size 1337
DHA_Leaf CL403.Contig1_DHA_Leaf 100.0 100.0 2488 0.0 size 1331
F1_Leaf CL4410.Contig1_F1_Leaf 100.0 100.0 2488 0.0 size 1266
A.roylei_Leaf CL4984.Contig1_A.roylei_Leaf 97.6 97.6 2303 0.0 size 1392
F1_Bulb CL6432.Contig1_F1_Bulb 100.0 100.0 1846 0.0 size 931
A.roylei_Bulb CL4303.Contig1_A.roylei_Bulb 97.6 97.6 2303 0.0 size 1376
DHA_Root Unigene33320_DHA_Root 100.0 100.0 2488 0.0 size 1283
F1_Root CL4547.Contig1_F1_Root 100.0 100.0 2488 0.0 size 1291
A.roylei_Root CL7069.Contig1_A.roylei_Root 97.6 97.6 2303 0.0 size 1420
FFStem CL4490.Contig1_FFStem 94.8 94.8 2022 0.0 size 1274
FF_5AStem CL6357.Contig1_FF_5AStem 95.2 95.2 2052 0.0 size 1325
GI_kazusaEST TC7292 99.6 99.6 2077 0.0 similar to UniRef100_Q7XC53 Cluster: Dual specificity phosphatase, catalytic domain containing protein, expressed; n=3; Oryza sativa|Rep: Dual specificity phosphatase, catalytic domain containing protein, expressed - Oryza sativa subsp. japonica (Rice), partial (54%)
A.fistulosum_Unigene AFU_04320 95.2 95.2 2052 0.0

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