AlliumTDB
[DHA_Bulb] CL15.Contig2_DHA_Bulb
Sequence
Expression profile
RPKM (Reads Per Kilobase of exon per Million mapped reads)
Length: 151 (bp)
RPKM (DHA_bulb): 4.28
| Reference | Bulb | Root | Leaf | Stem | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| DHA_Bulb | F1 | A.roylei | DHA | F1 | A.roylei | DHC | DHA | F1 | A.roylei | FF | FF+5A |
| 4.28 | 2.36 | 4.19 | 0.79 | 0.26 | 3.42 | 0.00 | 0.26 | 0.27 | 0.79 | 2.48 | 5.97 |
chromosome addition lines
| FF1A | FF2A | FF3A | FF4A | FF5A | FF6A | FF7A | FF8A | AA | FF | |
|---|---|---|---|---|---|---|---|---|---|---|
| Bulb | 1.75 | 2.11 | 2.09 | 1.07 | 3.37 | 2.06 | 2.23 | 1.76 | 1.71 | 3.31 |
| Root | 0.14 | 0.59 | 0.34 | 0.32 | 0.6 | 0.58 | 0.29 | 0.59 | 0 | 0.19 |
| Leaf | 0.33 | 0 | 0 | 0.8 | 0.64 | 0.17 | 0 | 0.44 | 0 | 0 |
BLAST
| DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
|---|---|---|---|---|---|---|
| TAIR | --No_Hits-- | |||||
| IRGSP | --No_Hits-- | |||||
| nr | --No_Hits-- |
Corresponding unigene
| DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
|---|---|---|---|---|---|---|
| DHC_Leaf | --No_Hits-- | |||||
| DHA_Leaf | --No_Hits-- | |||||
| F1_Leaf | --No_Hits-- | |||||
| A.roylei_Leaf | --No_Hits-- | |||||
| F1_Bulb | CL2727.Contig1_F1_Bulb | 100.0 | 100.0 | 299 | 2e-81 | size 1250 |
| A.roylei_Bulb | Unigene21443_A.roylei_Bulb | 98.4 | 98.4 | 226 | 3e-59 | size 1257 |
| DHA_Root | --No_Hits-- | |||||
| F1_Root | Unigene17876_F1_Root | 100.0 | 100.0 | 75.8 | 7e-14 | size 343 |
| A.roylei_Root | --No_Hits-- | |||||
| FFStem | CL3278.Contig1_FFStem | 98.6 | 98.6 | 270 | 2e-72 | size 481 |
| FF_5AStem | CL7760.Contig1_FF_5AStem | 98.7 | 98.7 | 283 | 1e-76 | size 434 |
| GI_kazusaEST | AcFES03G19 | 100.0 | 100.0 | 115 | 3e-26 | |
| A.fistulosum_Unigene | AFU_08205 | 98.4 | 98.4 | 226 | 7e-59 |
