Length: 285 (bp)
RPKM (DHA_bulb): 40.97
Reference | Bulb | Root | Leaf | Stem | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
DHA_Bulb | F1 | A.roylei | DHA | F1 | A.roylei | DHC | DHA | F1 | A.roylei | FF | FF+5A |
40.97 | 48.50 | 10.28 | 16.09 | 101.23 | 5.29 | 11.67 | 33.59 | 33.37 | 11.93 | 18.42 | 24.63 |
chromosome addition lines
FF1A | FF2A | FF3A | FF4A | FF5A | FF6A | FF7A | FF8A | AA | FF | |
---|---|---|---|---|---|---|---|---|---|---|
Bulb | 5.47 | 4.46 | 5.48 | 5.67 | 8.44 | 4.31 | 6.25 | 7.03 | 8.26 | 7.62 |
Root | 4.96 | 4.82 | 4.76 | 5.79 | 6.76 | 2.3 | 6.05 | 5.24 | 10.56 | 5.68 |
Leaf | 4.29 | 2.78 | 3.4 | 3.79 | 6.58 | 3.08 | 4.57 | 4.89 | 10.31 | 3.04 |
DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
---|---|---|---|---|---|---|
TAIR | AT5G42960.1 | 54.9 | 78.9 | 87.4 | 2e-18 | | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:17235184-17236478 FORWARD LENGTH=213 |
IRGSP | Os03t0855600-02 | 51.4 | 66.7 | 75.5 | 7e-15 | Similar to DANA2. |
nr | ref|NP_001242188.1| | 67.6 | 83.1 | 105 | 6e-21 | uncharacterized protein LOC100785739 [Glycine max] gi|255647198|gb|ACU24067.1| unknown [Glycine max] |
DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
---|---|---|---|---|---|---|
DHC_Leaf | CL661.Contig4_DHC_Leaf | 100.0 | 100.0 | 555 | 1e-158 | size 899 |
DHA_Leaf | Unigene24993_DHA_Leaf | 100.0 | 100.0 | 549 | 1e-156 | size 911 |
F1_Leaf | Unigene19411_F1_Leaf | 100.0 | 100.0 | 565 | 1e-161 | size 928 |
A.roylei_Leaf | Unigene26627_A.roylei_Leaf | 97.8 | 97.8 | 327 | 2e-89 | size 230 |
F1_Bulb | CL2239.Contig2_F1_Bulb | 100.0 | 100.0 | 527 | 1e-149 | size 782 |
A.roylei_Bulb | CL3583.Contig3_A.roylei_Bulb | 97.8 | 97.8 | 327 | 2e-89 | size 211 |
DHA_Root | CL3235.Contig1_DHA_Root | 100.0 | 100.0 | 565 | 1e-161 | size 294 |
F1_Root | Unigene20001_F1_Root | 100.0 | 100.0 | 555 | 1e-158 | size 939 |
A.roylei_Root | CL255.Contig3_A.roylei_Root | 97.2 | 97.2 | 379 | 1e-105 | size 248 |
FFStem | CL6739.Contig1_FFStem | 95.7 | 95.7 | 444 | 1e-124 | size 936 |
FF_5AStem | CL7182.Contig1_FF_5AStem | 96.4 | 96.4 | 460 | 1e-129 | size 935 |
GI_kazusaEST | onion_EST_c2348 | 81.8 | 81.8 | 113 | 2e-25 | |
A.fistulosum_Unigene | AFU_21179 | 95.4 | 95.4 | 414 | 1e-115 |