Sequence

CL14.Contig3_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
14.87 8.02 7.11 7.93 15.22 11.46 6.76 8.80 6.33 6.83 6.60 5.73

Chromosome addition lines
FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 3.35 6.29 2.41 1.99 2.41 1.52 3.55 2.66 9.52 3.08
Root 4.66 7.82 4.26 4.87 3.1 2.52 5.7 6.08 13.61 3.74
Leaf 3.46 5.37 3.24 3.13 2.92 2.59 2.71 4.65 13.9 3.55
DHA_Fusarium
Control TA AC76
average SD average SD average SD
6.62 0.73 6.25 0.40 6.51 2.36

BLAST

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
TAIR AT1G45170.2 60.3 83.8 86.7 1e-17 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42960.1); Has 60 Blast hits to 60 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17096233-17097910 REVERSE LENGTH=167
IRGSP Os03t0855600-02 51.6 75.8 70.1 8e-13 Similar to DANA2.
nr gb|ABF70167.1| 68.7 86.6 99.4 4e-19 hypothetical protein MA4_112I10.60 [Musa acuminata]

Corresponding unigene

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
DHC_Leaf Unigene27275_DHC_Leaf 100.0 100.0 589 1e-168 size 332
DHA_Leaf Unigene24992_DHA_Leaf 100.0 100.0 589 1e-168 size 965
F1_Leaf Unigene19410_F1_Leaf 100.0 100.0 589 1e-168 size 940
A.roylei_Leaf CL1574.Contig1_A.roylei_Leaf 98.3 98.3 549 1e-156 size 787
F1_Bulb CL2239.Contig1_F1_Bulb 100.0 100.0 589 1e-168 size 940
A.roylei_Bulb CL3583.Contig2_A.roylei_Bulb 98.5 98.5 507 1e-143 size 584
DHA_Root CL3235.Contig2_DHA_Root 100.0 100.0 589 1e-168 size 936
F1_Root Unigene20000_F1_Root 100.0 100.0 589 1e-168 size 1038
A.roylei_Root CL255.Contig2_A.roylei_Root 98.2 98.2 517 1e-146 size 809
FFStem CL6739.Contig2_FFStem 96.6 96.6 450 1e-126 size 791
FF_5AStem Unigene31810_FF_5AStem 96.6 96.6 456 1e-128 size 389
GI_kazusaEST onion_EST_c2348 100.0 100.0 509 1e-144
A.fistulosum_Unigene AFU_14253 93.5 93.5 383 1e-105


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