Sequence

CL14.Contig2_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
21.80 11.66 5.98 12.74 20.26 14.24 9.54 14.81 10.23 8.39 7.72 6.68

Chromosome addition lines
FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 11.03 18.24 8.59 7.21 7.66 7.82 11.57 11.29 27.95 10.6
Root 8.57 17.43 7.73 8.15 5.54 4.82 11.94 11.02 26.89 7.89
Leaf 11.28 20.48 12.69 10.31 12.72 9.08 9.47 18.83 44.39 11.54
DHA_Fusarium
Control TA AC76
average SD average SD average SD
13.07 1.78 12.39 1.17 13.58 5.47

BLAST

DB AC Iden
(%)		 Posi
(%)		 Score Evalue Annotation
TAIR AT1G45170.1 59.5 76.7 265 3e-71 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42960.1); Has 62 Blast hits to 62 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17096233-17097910 REVERSE LENGTH=213
IRGSP Os03t0855600-02 52.5 70.9 240 1e-63 Similar to DANA2.
nr ref|XP_002510363.1| 62.3 79.1 278 2e-72 conserved hypothetical protein [Ricinus communis] gi|223551064|gb|EEF52550.1| conserved hypothetical protein [Ricinus communis]

Corresponding unigene

DB AC Iden
(%)		 Posi
(%)		 Score Evalue Annotation
DHC_Leaf CL661.Contig2_DHC_Leaf 100.0 100.0 1852 0.0 size 936
DHA_Leaf Unigene24992_DHA_Leaf 100.0 100.0 1852 0.0 size 965
F1_Leaf Unigene19410_F1_Leaf 100.0 100.0 1852 0.0 size 940
A.roylei_Leaf CL1574.Contig1_A.roylei_Leaf 98.3 98.3 1437 0.0 size 787
F1_Bulb CL2239.Contig1_F1_Bulb 100.0 100.0 1852 0.0 size 940
A.roylei_Bulb CL3583.Contig1_A.roylei_Bulb 98.6 98.6 1294 0.0 size 693
DHA_Root CL3235.Contig2_DHA_Root 100.0 100.0 1852 0.0 size 936
F1_Root Unigene20000_F1_Root 100.0 100.0 1852 0.0 size 1038
A.roylei_Root CL255.Contig2_A.roylei_Root 98.3 98.3 1493 0.0 size 809
FFStem CL6739.Contig2_FFStem 97.6 97.6 1417 0.0 size 791
FF_5AStem Unigene35795_FF_5AStem 96.8 96.8 763 0.0 size 443
GI_kazusaEST onion_EST_c2348 99.9 99.9 1580 0.0
A.fistulosum_Unigene AFU_14253 96.5 96.5 1445 0.0

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