Sequence

CL14.Contig1_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
6.62 4.40 1.85 3.00 4.54 1.62 3.47 4.76 4.11 2.34 7.07 4.82

FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 7.53 5.29 5.78 9.72 11.79 5.22 7.92 8.27 11.58 8.47
Root 1.32 1 1.4 1.87 1.72 0.39 2.1 1.45 1.82 1.37
Leaf 3.77 4.87 6.55 5.47 9.62 5.42 4.17 7.16 13.47 3.26

BLAST

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
TAIR AT1G45170.1 54.5 80.0 74.7 1e-14 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42960.1); Has 62 Blast hits to 62 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17096233-17097910 REVERSE LENGTH=213
IRGSP --No_Hits--
nr ref|XP_004147789.1| 60.0 87.3 82.0 5e-14 PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Cucumis sativus] gi|449476784|ref|XP_004154833.1| PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Cucumis sativus]


Corresponding unigene

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
DHC_Leaf CL661.Contig3_DHC_Leaf 100.0 100.0 339 3e-93 size 931
DHA_Leaf Unigene24993_DHA_Leaf 100.0 100.0 339 3e-93 size 911
F1_Leaf Unigene19411_F1_Leaf 100.0 100.0 339 3e-93 size 928
A.roylei_Leaf CL1574.Contig1_A.roylei_Leaf 83.6 83.6 117 2e-26 size 787
F1_Bulb CL2239.Contig2_F1_Bulb 100.0 100.0 339 3e-93 size 782
A.roylei_Bulb CL3583.Contig2_A.roylei_Bulb 100.0 100.0 339 3e-93 size 584
DHA_Root Unigene23049_DHA_Root 100.0 100.0 339 3e-93 size 171
F1_Root Unigene20001_F1_Root 100.0 100.0 339 3e-93 size 939
A.roylei_Root CL255.Contig2_A.roylei_Root 83.6 83.6 117 2e-26 size 809
FFStem CL6739.Contig1_FFStem 98.8 98.8 323 2e-88 size 936
FF_5AStem CL7182.Contig1_FF_5AStem 98.8 98.8 323 2e-88 size 935
GI_kazusaEST onion_EST_c2348 84.2 84.2 125 3e-29
A.fistulosum_Unigene AFU_21179 98.8 98.8 323 5e-88


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