AlliumTDB
[DHA_Bulb] CL13.Contig2_DHA_Bulb
Sequence
Expression profile
RPKM (Reads Per Kilobase of exon per Million mapped reads)
Length: 249 (bp)
RPKM (DHA_bulb): 3.57
| Reference | Bulb | Root | Leaf | Stem | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| DHA_Bulb | F1 | A.roylei | DHA | F1 | A.roylei | DHC | DHA | F1 | A.roylei | FF | FF+5A |
| 3.57 | 1.91 | 0.48 | 1.90 | 1.40 | 1.75 | 0.32 | 7.47 | 2.99 | 0.00 | 0.00 | 0.00 |
chromosome addition lines
| FF1A | FF2A | FF3A | FF4A | FF5A | FF6A | FF7A | FF8A | AA | FF | |
|---|---|---|---|---|---|---|---|---|---|---|
| Bulb | 0 | 0 | 2.38 | 0 | 0 | 0 | 0 | 0 | 3.51 | 0 |
| Root | 0.01 | 0 | 1.12 | 0 | 0 | 0 | 0 | 0 | 1.42 | 0 |
| Leaf | 0 | 0.1 | 0.4 | 0.1 | 0 | 0 | 0 | 0 | 0.47 | 0 |
BLAST
| DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
|---|---|---|---|---|---|---|
| TAIR | --No_Hits-- | |||||
| IRGSP | --No_Hits-- | |||||
| nr | emb|CAN67819.1| | 47.8 | 72.5 | 77.8 | 9e-13 | hypothetical protein VITISV_041315 [Vitis vinifera] |
Corresponding unigene
| DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
|---|---|---|---|---|---|---|
| DHC_Leaf | Unigene22002_DHC_Leaf | 89.0 | 89.0 | 272 | 8e-73 | size 610 |
| DHA_Leaf | CL6814.Contig1_DHA_Leaf | 100.0 | 100.0 | 494 | 1e-139 | size 1270 |
| F1_Leaf | CL748.Contig5_F1_Leaf | 91.1 | 91.1 | 317 | 2e-86 | size 1061 |
| A.roylei_Leaf | Unigene29473_A.roylei_Leaf | 84.5 | 84.5 | 157 | 3e-38 | size 463 |
| F1_Bulb | CL2252.Contig1_F1_Bulb | 91.1 | 91.1 | 317 | 2e-86 | size 375 |
| A.roylei_Bulb | --No_Hits-- | |||||
| DHA_Root | CL1861.Contig1_DHA_Root | 91.1 | 91.1 | 317 | 2e-86 | size 938 |
| F1_Root | CL5065.Contig1_F1_Root | 91.1 | 91.1 | 317 | 2e-86 | size 1203 |
| A.roylei_Root | CL6294.Contig1_A.roylei_Root | 98.3 | 98.3 | 325 | 7e-89 | size 176 |
| FFStem | --No_Hits-- | |||||
| FF_5AStem | --No_Hits-- | |||||
| GI_kazusaEST | --No_Hits-- | |||||
| A.fistulosum_Unigene | AFU_13918 | 83.7 | 83.7 | 60.0 | 2e-08 |
