Sequence

CL11.Contig5_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
38.68 36.65 41.48 32.46 40.57 54.89 14.17 27.09 11.75 5.90 44.83 19.83

FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 19.75 26.73 24.16 25.62 34.77 28.32 24.15 26.88 30.25 31.8
Root 46.78 38.69 33.68 30.37 67.25 40.88 35.55 32.12 32.82 43.25
Leaf 9.8 10.35 10.81 13.71 10 12.28 15.78 9.72 7.82 9.21

BLAST

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
TAIR AT3G51950.2 39.9 51.1 314 2e-85 | Symbols: | Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | chr3:19278244-19280407 REVERSE LENGTH=540
IRGSP Os07t0682400-03 43.9 52.3 449 1e-126 Nucleotide-binding, alpha-beta plait domain containing protein.
nr emb|CBI28616.3| 47.8 56.5 461 1e-127 unnamed protein product [Vitis vinifera]


Corresponding unigene

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
DHC_Leaf CL5601.Contig1_DHC_Leaf 99.7 99.7 4246 0.0 size 2174
DHA_Leaf CL428.Contig3_DHA_Leaf 99.9 99.9 4397 0.0 size 2239
F1_Leaf Unigene25371_F1_Leaf 99.9 99.9 1558 0.0 size 844
A.roylei_Leaf CL3089.Contig2_A.roylei_Leaf 98.5 98.5 1396 0.0 size 748
F1_Bulb CL295.Contig1_F1_Bulb 99.6 99.6 2000 0.0 size 1060
A.roylei_Bulb CL1427.Contig4_A.roylei_Bulb 98.9 98.9 1850 0.0 size 1058
DHA_Root Unigene31331_DHA_Root 97.0 97.0 2575 0.0 size 2290
F1_Root CL1793.Contig5_F1_Root 99.9 99.9 4339 0.0 size 2249
A.roylei_Root CL1282.Contig2_A.roylei_Root 98.8 98.8 4195 0.0 size 2279
FFStem Unigene28903_FFStem 97.9 97.9 1481 0.0 size 819
FF_5AStem Unigene28837_FF_5AStem 98.5 98.5 1503 0.0 size 810
GI_kazusaEST CF437730 99.5 99.5 1501 0.0 similar to UniRef100_Q10M00 Cluster: Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed; n=1; Oryza sativa Japonica Group|Rep: Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed - Oryza sativa subsp. japonica (Rice), partial (12%)
A.fistulosum_Unigene AFU_01013 98.1 98.1 3981 0.0


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