AlliumTDB
[DHA_Bulb] CL11.Contig4_DHA_Bulb
Sequence
Expression profile
RPKM (Reads Per Kilobase of exon per Million mapped reads)
Length: 2,265 (bp)
RPKM (DHA_bulb): 19.46
| Reference | Bulb | Root | Leaf | Stem | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| DHA_Bulb | F1 | A.roylei | DHA | F1 | A.roylei | DHC | DHA | F1 | A.roylei | FF | FF+5A |
| 19.46 | 21.63 | 22.26 | 13.72 | 16.56 | 23.99 | 6.56 | 14.34 | 7.32 | 4.93 | 22.70 | 13.19 |
chromosome addition lines
| FF1A | FF2A | FF3A | FF4A | FF5A | FF6A | FF7A | FF8A | AA | FF | |
|---|---|---|---|---|---|---|---|---|---|---|
| Bulb | 11.83 | 13.88 | 13.97 | 15.35 | 17.84 | 17.37 | 14.76 | 17.36 | 20.04 | 19.18 |
| Root | 20.18 | 18.84 | 15.62 | 15.65 | 26.83 | 17.84 | 17.7 | 15.7 | 13.91 | 21.41 |
| Leaf | 4.71 | 4.34 | 4.68 | 6.18 | 3.7 | 6.01 | 6.95 | 4.78 | 4.76 | 4 |
BLAST
| DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
|---|---|---|---|---|---|---|
| TAIR | AT3G51950.2 | 41.2 | 52.5 | 319 | 6e-87 | | Symbols: | Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | chr3:19278244-19280407 REVERSE LENGTH=540 |
| IRGSP | Os07t0682400-03 | 42.7 | 52.1 | 433 | 1e-121 | Nucleotide-binding, alpha-beta plait domain containing protein. |
| nr | ref|NP_001060660.1| | 42.7 | 52.1 | 433 | 1e-118 | Os07g0682400 [Oryza sativa Japonica Group] gi|122166929|sp|Q0D3J9.1|C3H53_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 53; Short=OsC3H53 gi|113612196|dbj|BAF22574.1| Os07g0682400 [Oryza sativa Japonica Group] gi|215767061|dbj|BAG99289.1| unnamed protein product [Oryza sativa Japonica Group] gi|215767076|dbj|BAG99304.1| unnamed protein product [Oryza sativa Japonica Group] |
Corresponding unigene
| DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
|---|---|---|---|---|---|---|
| DHC_Leaf | CL5601.Contig3_DHC_Leaf | 99.4 | 99.4 | 1953 | 0.0 | size 2082 |
| DHA_Leaf | Unigene28103_DHA_Leaf | 99.4 | 99.4 | 2016 | 0.0 | size 1721 |
| F1_Leaf | Unigene25371_F1_Leaf | 99.9 | 99.9 | 1558 | 0.0 | size 844 |
| A.roylei_Leaf | CL3089.Contig1_A.roylei_Leaf | 99.0 | 99.0 | 1320 | 0.0 | size 761 |
| F1_Bulb | CL295.Contig1_F1_Bulb | 99.6 | 99.6 | 1992 | 0.0 | size 1060 |
| A.roylei_Bulb | CL1427.Contig4_A.roylei_Bulb | 98.9 | 98.9 | 1850 | 0.0 | size 1058 |
| DHA_Root | Unigene26300_DHA_Root | 99.9 | 99.9 | 1937 | 0.0 | size 1030 |
| F1_Root | CL1793.Contig6_F1_Root | 99.8 | 99.8 | 2008 | 0.0 | size 2157 |
| A.roylei_Root | CL1282.Contig4_A.roylei_Root | 96.5 | 96.5 | 2456 | 0.0 | size 2009 |
| FFStem | CL4609.Contig3_FFStem | 94.3 | 94.3 | 1586 | 0.0 | size 1894 |
| FF_5AStem | Unigene28837_FF_5AStem | 98.5 | 98.5 | 1503 | 0.0 | size 810 |
| GI_kazusaEST | ES449306_e | 99.5 | 99.5 | 1465 | 0.0 | |
| A.fistulosum_Unigene | AFU_01013 | 98.1 | 98.1 | 1802 | 0.0 |
