Sequence

CL11.Contig4_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
19.46 21.63 22.26 13.72 16.56 23.99 6.56 14.34 7.32 4.93 22.70 13.19

Chromosome addition lines
FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 11.83 13.88 13.97 15.35 17.84 17.37 14.76 17.36 20.04 19.18
Root 20.18 18.84 15.62 15.65 26.83 17.84 17.7 15.7 13.91 21.41
Leaf 4.71 4.34 4.68 6.18 3.7 6.01 6.95 4.78 4.76 4
DHA_Fusarium
Control TA AC76
average SD average SD average SD
21.13 0.87 23.74 2.23 25.65 6.55

BLAST

DB AC Iden
(%)		 Posi
(%)		 Score Evalue Annotation
TAIR AT3G51950.2 41.2 52.5 319 6e-87 | Symbols: | Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | chr3:19278244-19280407 REVERSE LENGTH=540
IRGSP Os07t0682400-03 42.7 52.1 433 1e-121 Nucleotide-binding, alpha-beta plait domain containing protein.
nr ref|NP_001060660.1| 42.7 52.1 433 1e-118 Os07g0682400 [Oryza sativa Japonica Group] gi|122166929|sp|Q0D3J9.1|C3H53_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 53; Short=OsC3H53 gi|113612196|dbj|BAF22574.1| Os07g0682400 [Oryza sativa Japonica Group] gi|215767061|dbj|BAG99289.1| unnamed protein product [Oryza sativa Japonica Group] gi|215767076|dbj|BAG99304.1| unnamed protein product [Oryza sativa Japonica Group]

Corresponding unigene

DB AC Iden
(%)		 Posi
(%)		 Score Evalue Annotation
DHC_Leaf CL5601.Contig3_DHC_Leaf 99.4 99.4 1953 0.0 size 2082
DHA_Leaf Unigene28103_DHA_Leaf 99.4 99.4 2016 0.0 size 1721
F1_Leaf Unigene25371_F1_Leaf 99.9 99.9 1558 0.0 size 844
A.roylei_Leaf CL3089.Contig1_A.roylei_Leaf 99.0 99.0 1320 0.0 size 761
F1_Bulb CL295.Contig1_F1_Bulb 99.6 99.6 1992 0.0 size 1060
A.roylei_Bulb CL1427.Contig4_A.roylei_Bulb 98.9 98.9 1850 0.0 size 1058
DHA_Root Unigene26300_DHA_Root 99.9 99.9 1937 0.0 size 1030
F1_Root CL1793.Contig6_F1_Root 99.8 99.8 2008 0.0 size 2157
A.roylei_Root CL1282.Contig4_A.roylei_Root 96.5 96.5 2456 0.0 size 2009
FFStem CL4609.Contig3_FFStem 94.3 94.3 1586 0.0 size 1894
FF_5AStem Unigene28837_FF_5AStem 98.5 98.5 1503 0.0 size 810
GI_kazusaEST ES449306_e 99.5 99.5 1465 0.0
A.fistulosum_Unigene AFU_01013 98.1 98.1 1802 0.0

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