AlliumTDB
[DHA_Bulb] CL11.Contig3_DHA_Bulb
Sequence
Expression profile
RPKM (Reads Per Kilobase of exon per Million mapped reads)
Length: 2,274 (bp)
RPKM (DHA_bulb): 22.90
| Reference | Bulb | Root | Leaf | Stem | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| DHA_Bulb | F1 | A.roylei | DHA | F1 | A.roylei | DHC | DHA | F1 | A.roylei | FF | FF+5A |
| 22.90 | 23.46 | 26.41 | 17.47 | 18.95 | 26.30 | 7.92 | 17.08 | 8.16 | 6.95 | 29.74 | 15.30 |
chromosome addition lines
| FF1A | FF2A | FF3A | FF4A | FF5A | FF6A | FF7A | FF8A | AA | FF | |
|---|---|---|---|---|---|---|---|---|---|---|
| Bulb | 15.21 | 17.98 | 17.62 | 20.83 | 22.72 | 20.32 | 18.24 | 24.34 | 26.77 | 24.94 |
| Root | 27.46 | 26.84 | 22.9 | 24.93 | 33.84 | 23.43 | 24.54 | 22.8 | 20.83 | 31.53 |
| Leaf | 6.63 | 5.68 | 7.31 | 8.29 | 5.22 | 9.45 | 9.96 | 7.48 | 6.81 | 6.15 |
BLAST
| DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
|---|---|---|---|---|---|---|
| TAIR | AT3G51950.2 | 40.4 | 51.3 | 308 | 1e-83 | | Symbols: | Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | chr3:19278244-19280407 REVERSE LENGTH=540 |
| IRGSP | Os07t0682400-03 | 43.4 | 52.8 | 446 | 1e-125 | Nucleotide-binding, alpha-beta plait domain containing protein. |
| nr | ref|NP_001060660.1| | 43.4 | 52.8 | 446 | 1e-122 | Os07g0682400 [Oryza sativa Japonica Group] gi|122166929|sp|Q0D3J9.1|C3H53_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 53; Short=OsC3H53 gi|113612196|dbj|BAF22574.1| Os07g0682400 [Oryza sativa Japonica Group] gi|215767061|dbj|BAG99289.1| unnamed protein product [Oryza sativa Japonica Group] gi|215767076|dbj|BAG99304.1| unnamed protein product [Oryza sativa Japonica Group] |
Corresponding unigene
| DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
|---|---|---|---|---|---|---|
| DHC_Leaf | CL5601.Contig3_DHC_Leaf | 95.2 | 95.2 | 2083 | 0.0 | size 2082 |
| DHA_Leaf | Unigene28103_DHA_Leaf | 97.1 | 97.1 | 2682 | 0.0 | size 1721 |
| F1_Leaf | CL7001.Contig3_F1_Leaf | 95.1 | 95.1 | 1663 | 0.0 | size 1186 |
| A.roylei_Leaf | CL3089.Contig3_A.roylei_Leaf | 95.0 | 95.0 | 1659 | 0.0 | size 1869 |
| F1_Bulb | CL295.Contig1_F1_Bulb | 99.6 | 99.6 | 2000 | 0.0 | size 1060 |
| A.roylei_Bulb | CL1427.Contig4_A.roylei_Bulb | 98.9 | 98.9 | 1850 | 0.0 | size 1058 |
| DHA_Root | CL6854.Contig1_DHA_Root | 96.9 | 96.9 | 2591 | 0.0 | size 2305 |
| F1_Root | CL1793.Contig1_F1_Root | 99.6 | 99.6 | 2407 | 0.0 | size 1240 |
| A.roylei_Root | CL1282.Contig3_A.roylei_Root | 96.6 | 96.6 | 2482 | 0.0 | size 2018 |
| FFStem | CL4609.Contig2_FFStem | 94.7 | 94.7 | 1635 | 0.0 | size 1903 |
| FF_5AStem | CL5504.Contig1_FF_5AStem | 94.7 | 94.7 | 1635 | 0.0 | size 1910 |
| GI_kazusaEST | ES449306_e | 99.5 | 99.5 | 1465 | 0.0 | |
| A.fistulosum_Unigene | AFU_01013 | 93.9 | 93.9 | 1917 | 0.0 |
