Sequence

CL11.Contig3_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
22.90 23.46 26.41 17.47 18.95 26.30 7.92 17.08 8.16 6.95 29.74 15.30

Chromosome addition lines
FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 15.21 17.98 17.62 20.83 22.72 20.32 18.24 24.34 26.77 24.94
Root 27.46 26.84 22.9 24.93 33.84 23.43 24.54 22.8 20.83 31.53
Leaf 6.63 5.68 7.31 8.29 5.22 9.45 9.96 7.48 6.81 6.15
DHA_Fusarium
Control TA AC76
average SD average SD average SD
29.41 0.56 32.85 1.28 33.86 6.97

BLAST

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
TAIR AT3G51950.2 40.4 51.3 308 1e-83 | Symbols: | Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | chr3:19278244-19280407 REVERSE LENGTH=540
IRGSP Os07t0682400-03 43.4 52.8 446 1e-125 Nucleotide-binding, alpha-beta plait domain containing protein.
nr ref|NP_001060660.1| 43.4 52.8 446 1e-122 Os07g0682400 [Oryza sativa Japonica Group] gi|122166929|sp|Q0D3J9.1|C3H53_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 53; Short=OsC3H53 gi|113612196|dbj|BAF22574.1| Os07g0682400 [Oryza sativa Japonica Group] gi|215767061|dbj|BAG99289.1| unnamed protein product [Oryza sativa Japonica Group] gi|215767076|dbj|BAG99304.1| unnamed protein product [Oryza sativa Japonica Group]

Corresponding unigene

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
DHC_Leaf CL5601.Contig3_DHC_Leaf 95.2 95.2 2083 0.0 size 2082
DHA_Leaf Unigene28103_DHA_Leaf 97.1 97.1 2682 0.0 size 1721
F1_Leaf CL7001.Contig3_F1_Leaf 95.1 95.1 1663 0.0 size 1186
A.roylei_Leaf CL3089.Contig3_A.roylei_Leaf 95.0 95.0 1659 0.0 size 1869
F1_Bulb CL295.Contig1_F1_Bulb 99.6 99.6 2000 0.0 size 1060
A.roylei_Bulb CL1427.Contig4_A.roylei_Bulb 98.9 98.9 1850 0.0 size 1058
DHA_Root CL6854.Contig1_DHA_Root 96.9 96.9 2591 0.0 size 2305
F1_Root CL1793.Contig1_F1_Root 99.6 99.6 2407 0.0 size 1240
A.roylei_Root CL1282.Contig3_A.roylei_Root 96.6 96.6 2482 0.0 size 2018
FFStem CL4609.Contig2_FFStem 94.7 94.7 1635 0.0 size 1903
FF_5AStem CL5504.Contig1_FF_5AStem 94.7 94.7 1635 0.0 size 1910
GI_kazusaEST ES449306_e 99.5 99.5 1465 0.0
A.fistulosum_Unigene AFU_01013 93.9 93.9 1917 0.0


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