Length: 1,085 (bp)
RPKM (DHA_bulb): 39.28
Reference | Bulb | Root | Leaf | Stem | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
DHA_Bulb | F1 | A.roylei | DHA | F1 | A.roylei | DHC | DHA | F1 | A.roylei | FF | FF+5A |
39.28 | 56.10 | 58.22 | 24.44 | 27.81 | 49.75 | 10.04 | 23.65 | 13.64 | 15.78 | 41.09 | 24.33 |
chromosome addition lines
FF1A | FF2A | FF3A | FF4A | FF5A | FF6A | FF7A | FF8A | AA | FF | |
---|---|---|---|---|---|---|---|---|---|---|
Bulb | 36.04 | 35.15 | 49.17 | 58.04 | 49.91 | 47.84 | 45.71 | 67.04 | 70.76 | 66.8 |
Root | 32.9 | 35.75 | 32.31 | 36.63 | 30.98 | 28.97 | 36.18 | 37.17 | 30.24 | 48.9 |
Leaf | 14.4 | 9.94 | 19.75 | 17.46 | 9.49 | 24.39 | 21.2 | 20.02 | 10.39 | 16.81 |
DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
---|---|---|---|---|---|---|
TAIR | AT3G51950.2 | 49.4 | 57.9 | 247 | 1e-65 | | Symbols: | Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | chr3:19278244-19280407 REVERSE LENGTH=540 |
IRGSP | Os07t0682400-03 | 56.1 | 62.6 | 212 | 4e-55 | Nucleotide-binding, alpha-beta plait domain containing protein. |
nr | tpg|DAA64156.1| | 46.5 | 54.0 | 287 | 4e-75 | TPA: putative RNA-binding zinc finger family protein [Zea mays] |
DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
---|---|---|---|---|---|---|
DHC_Leaf | CL5601.Contig2_DHC_Leaf | 99.7 | 99.7 | 1980 | 0.0 | size 1150 |
DHA_Leaf | CL428.Contig5_DHA_Leaf | 100.0 | 100.0 | 2060 | 0.0 | size 1125 |
F1_Leaf | CL7001.Contig2_F1_Leaf | 100.0 | 100.0 | 1986 | 0.0 | size 1779 |
A.roylei_Leaf | CL3089.Contig3_A.roylei_Leaf | 98.6 | 98.6 | 1961 | 0.0 | size 1869 |
F1_Bulb | Unigene519_F1_Bulb | 99.8 | 99.8 | 2135 | 0.0 | size 1112 |
A.roylei_Bulb | CL1427.Contig2_A.roylei_Bulb | 98.7 | 98.7 | 2032 | 0.0 | size 2043 |
DHA_Root | Unigene31332_DHA_Root | 100.0 | 100.0 | 2151 | 0.0 | size 1252 |
F1_Root | CL1793.Contig4_F1_Root | 100.0 | 100.0 | 2151 | 0.0 | size 2420 |
A.roylei_Root | CL1282.Contig1_A.roylei_Root | 98.7 | 98.7 | 2008 | 0.0 | size 2322 |
FFStem | CL4609.Contig3_FFStem | 97.9 | 97.9 | 1953 | 0.0 | size 1894 |
FF_5AStem | CL5504.Contig1_FF_5AStem | 97.8 | 97.8 | 1951 | 0.0 | size 1910 |
GI_kazusaEST | CF444169_e | 90.1 | 90.1 | 137 | 6e-32 | |
A.fistulosum_Unigene | AFU_01013 | 85.3 | 85.3 | 228 | 1e-58 |