Sequence

CL1.Contig2_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
10.55 12.19 9.00 22.11 42.57 13.88 15.14 22.09 27.71 21.49 7.53 7.63

Chromosome addition lines
FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 7.01 12.71 7.77 6.2 7.34 9.34 9.41 11.39 10.51 6.18
Root 8.54 5.6 13.7 5.57 6.84 5.87 11.77 15.34 13.64 5.82
Leaf 11.23 11.24 11.8 12.21 17.44 13 14.14 16.64 44.03 11.91
DHA_Fusarium
Control TA AC76
average SD average SD average SD
23.47 2.09 23.09 2.63 19.77 0.47

BLAST

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
TAIR --No_Hits--
IRGSP Os01t0919500-01 30.5 45.3 86.3 2e-17 Zinc finger, RING/FYVE/PHD-type domain containing protein.
nr --No_Hits--

Corresponding unigene

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
DHC_Leaf Unigene11933_DHC_Leaf 98.9 98.9 1568 0.0 size 1058
DHA_Leaf Unigene30923_DHA_Leaf 100.0 100.0 1639 0.0 size 1110
F1_Leaf CL4296.Contig2_F1_Leaf 99.4 99.4 1600 0.0 size 869
A.roylei_Leaf CL5732.Contig2_A.roylei_Leaf 97.7 97.7 1489 0.0 size 890
F1_Bulb Unigene23152_F1_Bulb 99.5 99.5 1520 0.0 size 952
A.roylei_Bulb Unigene5853_A.roylei_Bulb 97.7 97.7 1390 0.0 size 956
DHA_Root CL5420.Contig2_DHA_Root 99.4 99.4 1600 0.0 size 885
F1_Root Unigene24935_F1_Root 100.0 100.0 1639 0.0 size 1071
A.roylei_Root Unigene21829_A.roylei_Root 97.7 97.7 1483 0.0 size 978
FFStem Unigene14244_FFStem 98.0 98.0 1372 0.0 size 893
FF_5AStem Unigene15992_FF_5AStem 97.8 97.8 1481 0.0 size 1080
GI_kazusaEST AcFES12F11 100.0 100.0 1564 0.0
A.fistulosum_Unigene AFU_11705 97.8 97.8 1481 0.0


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