Sequence

CL2.Contig1_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
23.29 20.65 23.59 23.68 27.81 19.50 9.69 26.71 19.84 12.53 21.96 22.87

Chromosome addition lines
FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 15.84 18.6 17.65 21.83 32.75 23.02 25.15 24.41 20.9 28.83
Root 20.21 18.55 20.73 23.79 33.64 21.79 29.73 27.11 26.83 23.61
Leaf 6.32 7.18 9.45 11.69 11.98 11.56 12.52 8.35 11.49 9.56
DHA_Fusarium
Control TA AC76
average SD average SD average SD
33.37 4.48 29.65 3.46 26.45 1.85

BLAST

DB AC Iden
(%)		 Posi
(%)		 Score Evalue Annotation
TAIR AT4G03080.1 71.4 79.7 1261 0.0 | Symbols: BSL1 | BRI1 suppressor 1 (BSU1)-like 1 | chr4:1359935-1365166 REVERSE LENGTH=881
IRGSP Os05t0144400-01 74.2 81.4 1292 0.0 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase domain containing protein.
nr ref|XP_002270638.2| 74.3 80.2 1292 0.0 PREDICTED: serine/threonine-protein phosphatase BSL1-like [Vitis vinifera] gi|296086652|emb|CBI32287.3| unnamed protein product [Vitis vinifera]

Corresponding unigene

DB AC Iden
(%)		 Posi
(%)		 Score Evalue Annotation
DHC_Leaf Unigene28327_DHC_Leaf 100.0 100.0 1758 0.0 size 887
DHA_Leaf Unigene8032_DHA_Leaf 100.0 100.0 6086 0.0 size 3114
F1_Leaf Unigene19451_F1_Leaf 100.0 100.0 6078 0.0 size 3070
A.roylei_Leaf CL6004.Contig2_A.roylei_Leaf 99.0 99.0 3120 0.0 size 1642
F1_Bulb CL4985.Contig2_F1_Bulb 99.9 99.9 6046 0.0 size 3075
A.roylei_Bulb CL5131.Contig1_A.roylei_Bulb 98.3 98.3 5584 0.0 size 3022
DHA_Root Unigene22444_DHA_Root 99.9 99.9 4333 0.0 size 2194
F1_Root Unigene22594_F1_Root 100.0 100.0 6084 0.0 size 3069
A.roylei_Root CL7237.Contig2_A.roylei_Root 99.0 99.0 3140 0.0 size 1655
FFStem CL3999.Contig2_FFStem 98.3 98.3 3092 0.0 size 1675
FF_5AStem CL2880.Contig2_FF_5AStem 98.0 98.0 3812 0.0 size 2209
GI_kazusaEST TC6191 99.0 99.0 1818 0.0 similar to UniRef100_A2Y0B6 Cluster: Serine/threonine protein phosphatase; n=1; Oryza sativa Indica Group|Rep: Serine/threonine protein phosphatase - Oryza sativa subsp. indica (Rice), partial (33%)
A.fistulosum_Unigene AFU_14103 98.8 98.8 1717 0.0

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