Sequence

CL7.Contig2_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
4.54 6.62 0.00 37.59 13.75 3.55 3.31 1.56 1.91 0.00 1.68 0.23

Chromosome addition lines
FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 0.43 1.02 1.81 0.37 0.73 1.21 0.57 0.48 4.31 0.16
Root 3.89 6.92 31.88 3.23 4.82 4.1 1.84 7.43 35.8 1.33
Leaf 0.8 1.51 1.8 1.42 0.62 0.99 0.82 0.75 0.84 0.98
DHA_Fusarium
Control TA AC76
average SD average SD average SD
27.99 3.30 23.50 2.37 27.82 1.39

BLAST

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
TAIR AT4G27890.1 61.9 78.1 144 1e-35 | Symbols: | HSP20-like chaperones superfamily protein | chr4:13886033-13887220 FORWARD LENGTH=293
IRGSP Os06t0231300-01 69.1 83.5 153 3e-38 CS domain domain containing protein.
nr gb|EOY23533.1| 65.4 82.2 155 4e-36 HSP20-like chaperones superfamily protein isoform 2 [Theobroma cacao]

Corresponding unigene

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
DHC_Leaf Unigene14849_DHC_Leaf 100.0 100.0 428 1e-120 size 430
DHA_Leaf CL4603.Contig2_DHA_Leaf 100.0 100.0 513 1e-145 size 388
F1_Leaf CL1869.Contig5_F1_Leaf 100.0 100.0 315 1e-85 size 159
A.roylei_Leaf Unigene25722_A.roylei_Leaf 79.2 79.2 91.7 2e-18 size 1169
F1_Bulb Unigene15750_F1_Bulb 99.7 99.7 646 0.0 size 442
A.roylei_Bulb Unigene28668_A.roylei_Bulb 79.2 79.2 91.7 3e-18 size 1177
DHA_Root CL385.Contig4_DHA_Root 99.4 99.4 672 0.0 size 712
F1_Root CL1939.Contig2_F1_Root 100.0 100.0 688 0.0 size 714
A.roylei_Root CL4950.Contig1_A.roylei_Root 95.2 95.2 400 1e-111 size 374
FFStem Unigene23324_FFStem 78.8 78.8 83.8 7e-16 size 1211
FF_5AStem Unigene13809_FF_5AStem 78.8 78.8 83.8 7e-16 size 1156
GI_kazusaEST CF436182 84.6 84.6 69.9 3e-12 similar to UniRef100_A9RZW7 Cluster: Predicted protein; n=1; Physcomitrella patens subsp. patens|Rep: Predicted protein - Physcomitrella patens subsp. patens, partial (14%)
A.fistulosum_Unigene AFU_08133 78.8 78.8 83.8 2e-15


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