AlliumTDB
[DHA_Bulb] CL5.Contig2_DHA_Bulb
Sequence
Expression profile
RPKM (Reads Per Kilobase of exon per Million mapped reads)
Length: 236 (bp)
RPKM (DHA_bulb): 1.88
| Reference | Bulb | Root | Leaf | Stem | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| DHA_Bulb | F1 | A.roylei | DHA | F1 | A.roylei | DHC | DHA | F1 | A.roylei | FF | FF+5A |
| 1.88 | 1.68 | 0.00 | 0.67 | 1.97 | 0.00 | 0.00 | 1.31 | 1.40 | 0.00 | 0.00 | 0.00 |
chromosome addition lines
| FF1A | FF2A | FF3A | FF4A | FF5A | FF6A | FF7A | FF8A | AA | FF | |
|---|---|---|---|---|---|---|---|---|---|---|
| Bulb | 0 | 0.1 | 0 | 0 | 0 | 0 | 0 | 1.6 | 6.21 | 0 |
| Root | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.94 | 3.79 | 0 |
| Leaf | 0 | 0 | 0 | 0 | 0 | 0 | 0.12 | 1.58 | 0.85 | 0.13 |
BLAST
| DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
|---|---|---|---|---|---|---|
| TAIR | --No_Hits-- | |||||
| IRGSP | --No_Hits-- | |||||
| nr | --No_Hits-- |
Corresponding unigene
| DB | AC | Iden (%) |
Posi (%) |
Score | Evalue | Annotation |
|---|---|---|---|---|---|---|
| DHC_Leaf | --No_Hits-- | |||||
| DHA_Leaf | Unigene6943_DHA_Leaf | 100.0 | 100.0 | 157 | 4e-38 | size 225 |
| F1_Leaf | Unigene6384_F1_Leaf | 100.0 | 100.0 | 157 | 3e-38 | size 225 |
| A.roylei_Leaf | --No_Hits-- | |||||
| F1_Bulb | Unigene7211_F1_Bulb | 100.0 | 100.0 | 141 | 2e-33 | size 215 |
| A.roylei_Bulb | --No_Hits-- | |||||
| DHA_Root | CL4587.Contig2_DHA_Root | 100.0 | 100.0 | 331 | 1e-90 | size 173 |
| F1_Root | Unigene16069_F1_Root | 100.0 | 100.0 | 359 | 5e-99 | size 361 |
| A.roylei_Root | --No_Hits-- | |||||
| FFStem | --No_Hits-- | |||||
| FF_5AStem | --No_Hits-- | |||||
| GI_kazusaEST | --No_Hits-- | |||||
| A.fistulosum_Unigene | AFU_77549 | 86.8 | 86.8 | 71.9 | 4e-12 |
