Sequence

CL4.Contig7_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
12.34 8.77 19.49 2.72 5.18 8.48 2.27 9.76 4.10 7.63 4.14 1.05

Chromosome addition lines
FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 2.47 5.73 3.79 5.44 5.56 4.7 4.43 4.74 12.93 4.53
Root 2.91 9.55 3.41 4.88 5.42 4.42 6.25 3.5 9.09 5.23
Leaf 1.79 0.37 1.02 1.12 0.38 1.2 0.8 1.1 2.66 0.71
DHA_Fusarium
Control TA AC76
average SD average SD average SD
5.82 0.59 5.37 1.58 5.37 2.48

BLAST

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
TAIR AT4G16340.1 51.3 60.3 72.8 5e-14 | Symbols: SPK1 | guanyl-nucleotide exchange factors;GTPase binding;GTP binding | chr4:9228773-9241060 REVERSE LENGTH=1830
IRGSP --No_Hits--
nr gb|AAN65000.1| 49.4 61.0 69.7 3e-13 Putative adapter protein SPIKE1 [Oryza sativa Japonica Group]

Corresponding unigene

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
DHC_Leaf CL3918.Contig2_DHC_Leaf 94.0 94.0 224 2e-58 size 1596
DHA_Leaf CL6835.Contig7_DHA_Leaf 99.2 99.2 478 1e-135 size 545
F1_Leaf CL3529.Contig2_F1_Leaf 97.7 97.7 472 1e-133 size 873
A.roylei_Leaf Unigene182_A.roylei_Leaf 95.8 95.8 426 1e-119 size 1255
F1_Bulb CL4537.Contig1_F1_Bulb 99.2 99.2 504 1e-142 size 1656
A.roylei_Bulb CL4790.Contig1_A.roylei_Bulb 97.0 97.0 450 1e-126 size 3032
DHA_Root CL3487.Contig3_DHA_Root 94.0 94.0 224 2e-58 size 1035
F1_Root Unigene22672_F1_Root 97.3 97.3 458 1e-129 size 816
A.roylei_Root Unigene27773_A.roylei_Root 96.9 96.9 442 1e-124 size 596
FFStem Unigene26773_FFStem 96.6 96.6 442 1e-124 size 423
FF_5AStem Unigene43857_FF_5AStem 96.0 96.0 410 1e-114 size 402
GI_kazusaEST --No_Hits--
A.fistulosum_Unigene --No_Hits--


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