Sequence

CL4.Contig3_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
4.12 3.75 2.92 3.10 1.91 1.89 12.67 2.73 3.37 2.01 1.39 1.31

Chromosome addition lines
FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 1.54 1.44 1.51 2.2 1.32 2.1 1.68 1.6 6.74 2.01
Root 1.54 1.92 1.76 2.6 1.67 1.81 1.65 1.5 3.81 2.14
Leaf 0.91 1.64 0.97 2.52 1.86 1.06 1.47 0.83 4.77 1.72
DHA_Fusarium
Control TA AC76
average SD average SD average SD
4.51 0.33 4.08 0.88 3.74 1.57

BLAST

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
TAIR AT4G16340.1 52.6 67.4 177 2e-44 | Symbols: SPK1 | guanyl-nucleotide exchange factors;GTPase binding;GTP binding | chr4:9228773-9241060 REVERSE LENGTH=1830
IRGSP Os01t0897300-02 58.7 78.7 94.7 2e-19 Ribonuclease T2 family protein.
nr gb|AAN65000.1| 65.0 73.8 201 2e-91 Putative adapter protein SPIKE1 [Oryza sativa Japonica Group]

Corresponding unigene

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
DHC_Leaf CL3918.Contig1_DHC_Leaf 95.5 95.5 2232 0.0 size 1734
DHA_Leaf CL6835.Contig4_DHA_Leaf 99.0 99.0 3283 0.0 size 1991
F1_Leaf CL3529.Contig1_F1_Leaf 98.3 98.3 1752 0.0 size 1312
A.roylei_Leaf CL4523.Contig2_A.roylei_Leaf 95.1 95.1 888 0.0 size 668
F1_Bulb Unigene25586_F1_Bulb 99.7 99.7 1415 0.0 size 1431
A.roylei_Bulb CL4790.Contig2_A.roylei_Bulb 98.8 98.8 938 0.0 size 772
DHA_Root CL3487.Contig3_DHA_Root 98.1 98.1 1699 0.0 size 1035
F1_Root Unigene20282_F1_Root 99.6 99.6 1070 0.0 size 1044
A.roylei_Root CL2947.Contig2_A.roylei_Root 97.6 97.6 807 0.0 size 534
FFStem Unigene29113_FFStem 96.5 96.5 862 0.0 size 1121
FF_5AStem CL4690.Contig2_FF_5AStem 96.5 96.5 862 0.0 size 1064
GI_kazusaEST CF435122_e 99.4 99.4 916 0.0
A.fistulosum_Unigene AFU_10862 97.1 97.1 827 0.0


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