Sequence

CL4.Contig2_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
3.78 4.56 2.99 2.91 1.89 1.66 10.79 2.69 3.27 2.01 1.40 1.25

Chromosome addition lines
FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 2.08 1.82 1.82 2.3 1.74 1.94 1.87 1.75 6.89 2.23
Root 1.68 2 1.63 2.64 1.8 1.87 1.94 1.5 3.61 2.26
Leaf 1.08 1.15 1 2.41 1.89 1.53 1.62 0.97 4.68 1.2
DHA_Fusarium
Control TA AC76
average SD average SD average SD
4.15 0.11 3.65 0.95 3.71 1.67

BLAST

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
TAIR AT4G16340.1 52.3 67.2 176 6e-44 | Symbols: SPK1 | guanyl-nucleotide exchange factors;GTPase binding;GTP binding | chr4:9228773-9241060 REVERSE LENGTH=1830
IRGSP Os01t0897300-02 58.7 78.7 94.7 2e-19 Ribonuclease T2 family protein.
nr gb|AAN65000.1| 66.4 75.7 199 1e-90 Putative adapter protein SPIKE1 [Oryza sativa Japonica Group]

Corresponding unigene

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
DHC_Leaf CL3918.Contig1_DHC_Leaf 96.4 96.4 1901 0.0 size 1734
DHA_Leaf CL6835.Contig4_DHA_Leaf 99.0 99.0 3186 0.0 size 1991
F1_Leaf CL3529.Contig1_F1_Leaf 98.3 98.3 1752 0.0 size 1312
A.roylei_Leaf CL4523.Contig2_A.roylei_Leaf 95.1 95.1 888 0.0 size 668
F1_Bulb Unigene25586_F1_Bulb 99.7 99.7 1415 0.0 size 1431
A.roylei_Bulb CL4790.Contig2_A.roylei_Bulb 99.2 99.2 952 0.0 size 772
DHA_Root CL3487.Contig3_DHA_Root 98.3 98.3 1715 0.0 size 1035
F1_Root Unigene20282_F1_Root 99.6 99.6 1070 0.0 size 1044
A.roylei_Root CL2947.Contig2_A.roylei_Root 97.6 97.6 807 0.0 size 534
FFStem Unigene29113_FFStem 96.5 96.5 862 0.0 size 1121
FF_5AStem CL4690.Contig2_FF_5AStem 96.5 96.5 862 0.0 size 1064
GI_kazusaEST CF435122_e 99.4 99.4 916 0.0
A.fistulosum_Unigene AFU_10862 97.1 97.1 827 0.0


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