Sequence

CL4.Contig1_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
3.71 3.73 3.18 3.11 1.83 1.95 10.81 2.33 3.38 1.97 1.53 1.24

Chromosome addition lines
FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 2.29 2.54 2.58 2.93 2.51 2.5 2.62 2.3 6.6 3.06
Root 1.86 3.28 2 3.39 2.4 2.37 2.45 2.14 4.25 2.98
Leaf 1.16 1.43 1.47 2.83 2.03 1.91 1.3 1.05 4.24 1.59
DHA_Fusarium
Control TA AC76
average SD average SD average SD
4.05 0.65 3.47 0.98 3.41 1.37

BLAST

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
TAIR AT4G16340.1 47.0 61.4 171 2e-42 | Symbols: SPK1 | guanyl-nucleotide exchange factors;GTPase binding;GTP binding | chr4:9228773-9241060 REVERSE LENGTH=1830
IRGSP Os01t0897300-02 58.7 78.7 94.7 2e-19 Ribonuclease T2 family protein.
nr gb|AAN65000.1| 59.8 67.8 198 2e-90 Putative adapter protein SPIKE1 [Oryza sativa Japonica Group]

Corresponding unigene

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
DHC_Leaf CL3918.Contig1_DHC_Leaf 96.4 96.4 1903 0.0 size 1734
DHA_Leaf CL6835.Contig4_DHA_Leaf 98.9 98.9 3172 0.0 size 1991
F1_Leaf CL3529.Contig1_F1_Leaf 98.3 98.3 1752 0.0 size 1312
A.roylei_Leaf CL4523.Contig2_A.roylei_Leaf 95.1 95.1 888 0.0 size 668
F1_Bulb Unigene25586_F1_Bulb 99.7 99.7 1415 0.0 size 1431
A.roylei_Bulb CL4790.Contig2_A.roylei_Bulb 98.5 98.5 1392 0.0 size 772
DHA_Root CL3487.Contig3_DHA_Root 98.1 98.1 1699 0.0 size 1035
F1_Root Unigene20282_F1_Root 99.6 99.6 1070 0.0 size 1044
A.roylei_Root Unigene21225_A.roylei_Root 98.6 98.6 1185 0.0 size 638
FFStem Unigene29113_FFStem 96.5 96.5 862 0.0 size 1121
FF_5AStem CL4690.Contig2_FF_5AStem 96.5 96.5 862 0.0 size 1064
GI_kazusaEST CF435122_e 99.4 99.4 916 0.0
A.fistulosum_Unigene AFU_10862 97.1 97.1 827 0.0


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