Sequence

CL2.Contig3_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
20.98 18.10 14.61 23.27 25.13 14.36 10.15 21.50 19.45 9.97 14.10 10.81

Chromosome addition lines
FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 17.22 20.38 18.88 17.35 16.81 21.81 23.49 31.03 22.05 22.13
Root 30.8 25.63 37.48 26.86 30.2 27.93 41.62 42.61 30.73 30.39
Leaf 11.65 10.9 15.36 14.41 10.46 11.6 13.41 16.6 14.16 14.21
DHA_Fusarium
Control TA AC76
average SD average SD average SD
22.68 1.50 20.47 0.92 20.90 1.79

BLAST

DB AC Iden
(%)		 Posi
(%)		 Score Evalue Annotation
TAIR AT2G27210.1 80.5 85.4 1518 0.0 | Symbols: BSL3 | BRI1 suppressor 1 (BSU1)-like 3 | chr2:11630188-11636182 FORWARD LENGTH=1006
IRGSP Os12t0617900-02 80.6 85.7 1526 0.0 Similar to Serine/threonine protein phosphatase BSL2 (EC 3.1.3.16) (BSU1-like protein 2).
nr ref|XP_002264614.1| 81.8 86.6 1551 0.0 PREDICTED: serine/threonine-protein phosphatase BSL3-like [Vitis vinifera]

Corresponding unigene

DB AC Iden
(%)		 Posi
(%)		 Score Evalue Annotation
DHC_Leaf CL2269.Contig2_DHC_Leaf 99.7 99.7 3862 0.0 size 2295
DHA_Leaf CL62.Contig1_DHA_Leaf 100.0 100.0 6451 0.0 size 3593
F1_Leaf CL3712.Contig1_F1_Leaf 100.0 100.0 4597 0.0 size 2581
A.roylei_Leaf CL6004.Contig3_A.roylei_Leaf 99.0 99.0 2962 0.0 size 1558
F1_Bulb CL4985.Contig1_F1_Bulb 100.0 100.0 6443 0.0 size 3512
A.roylei_Bulb CL1738.Contig3_A.roylei_Bulb 99.1 99.1 4894 0.0 size 2800
DHA_Root CL1131.Contig1_DHA_Root 99.9 99.9 6427 0.0 size 3515
F1_Root CL996.Contig1_F1_Root 100.0 100.0 6451 0.0 size 3523
A.roylei_Root CL2750.Contig1_A.roylei_Root 98.9 98.9 3170 0.0 size 1675
FFStem CL6505.Contig1_FFStem 98.6 98.6 6030 0.0 size 3459
FF_5AStem CL1601.Contig1_FF_5AStem 98.8 98.8 3267 0.0 size 1732
GI_kazusaEST TC6112 99.9 99.9 2077 0.0 homologue to UniRef100_A7QVR2 Cluster: Serine/threonine protein phosphatase; n=1; Vitis vinifera|Rep: Serine/threonine protein phosphatase - Vitis vinifera (Grape), partial (34%)
A.fistulosum_Unigene AFU_02176 98.7 98.7 2845 0.0

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