Sequence

CL17.Contig1_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
10.87 11.14 10.16 10.59 8.49 10.57 6.41 10.17 10.59 6.65 10.31 9.74

Chromosome addition lines
FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 8.73 7.95 10.55 10.05 10.76 11.26 19.84 12.49 10.36 11.22
Root 10.64 9.8 11.65 12.5 14.35 12.17 16.82 10.53 11.27 12.57
Leaf 4.26 6.74 8.21 8.55 6.57 6.32 9.44 5.62 8.48 5.6
DHA_Fusarium
Control TA AC76
average SD average SD average SD
13.31 1.32 14.22 1.79 14.39 1.95

BLAST

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
TAIR AT3G06670.2 54.9 71.5 516 1e-146 | Symbols: | binding | chr3:2105908-2113136 REVERSE LENGTH=886
IRGSP Os01t0337600-02 60.3 75.5 566 1e-161 Similar to binding.
nr emb|CBI22902.3| 61.3 76.5 586 1e-165 unnamed protein product [Vitis vinifera]

Corresponding unigene

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
DHC_Leaf Unigene9536_DHC_Leaf 100.0 100.0 3422 0.0 size 1726
DHA_Leaf CL2926.Contig1_DHA_Leaf 100.0 100.0 3416 0.0 size 1843
F1_Leaf Unigene10075_F1_Leaf 100.0 100.0 3422 0.0 size 1729
A.roylei_Leaf CL5264.Contig2_A.roylei_Leaf 99.6 99.6 3348 0.0 size 1713
F1_Bulb CL3893.Contig1_F1_Bulb 100.0 100.0 3390 0.0 size 1710
A.roylei_Bulb Unigene623_A.roylei_Bulb 99.6 99.6 3336 0.0 size 1711
DHA_Root Unigene9210_DHA_Root 100.0 100.0 3447 0.0 size 1745
F1_Root Unigene26960_F1_Root 100.0 100.0 3287 0.0 size 1658
A.roylei_Root Unigene26158_A.roylei_Root 99.7 99.7 3360 0.0 size 1719
FFStem CL6384.Contig1_FFStem 98.9 98.9 3408 0.0 size 1884
FF_5AStem CL3831.Contig1_FF_5AStem 98.9 98.9 3326 0.0 size 1883
GI_kazusaEST --No_Hits--
A.fistulosum_Unigene AFU_00318 98.9 98.9 2958 0.0


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