Sequence

CL16.Contig2_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
11.39 9.64 16.14 11.90 16.23 24.76 25.84 15.64 17.70 19.75 15.22 15.93

Chromosome addition lines
FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 15.02 9.24 8.2 7.71 7.79 7.63 7.53 5.55 13.04 10.39
Root 23.93 13.97 12.65 12.73 22.79 15.86 12.02 11.77 13.87 17.92
Leaf 15.87 23.07 17.81 17.73 19.93 18.6 22.79 16.09 31.83 13.57
DHA_Fusarium
Control TA AC76
average SD average SD average SD
27.18 1.74 27.22 2.85 26.17 1.51

BLAST

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
TAIR AT2G35680.1 50.3 65.6 152 2e-37 | Symbols: | Phosphotyrosine protein phosphatases superfamily protein | chr2:14997004-14998590 REVERSE LENGTH=337
IRGSP Os10t0561900-04 53.2 67.2 195 3e-50 Similar to Protein-tyrosine phosphatase mitochondrial 1.
nr ref|NP_001065390.1| 53.2 67.2 195 1e-47 Os10g0561900 [Oryza sativa Japonica Group] gi|13569992|gb|AAK31276.1|AC079890_12 unknown protein [Oryza sativa Japonica Group] gi|31433516|gb|AAP55021.1| Dual specificity phosphatase, catalytic domain containing protein, expressed [Oryza sativa Japonica Group] gi|113639922|dbj|BAF27227.1| Os10g0561900 [Oryza sativa Japonica Group] gi|125532957|gb|EAY79522.1| hypothetical protein OsI_34652 [Oryza sativa Indica Group] gi|125575697|gb|EAZ16981.1| hypothetical protein OsJ_32466 [Oryza sativa Japonica Group] gi|215736902|dbj|BAG95831.1| unnamed protein product [Oryza sativa Japonica Group]

Corresponding unigene

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
DHC_Leaf Unigene26498_DHC_Leaf 100.0 100.0 1296 0.0 size 1337
DHA_Leaf CL403.Contig1_DHA_Leaf 100.0 100.0 1296 0.0 size 1331
F1_Leaf CL4410.Contig2_F1_Leaf 100.0 100.0 1441 0.0 size 729
A.roylei_Leaf CL4984.Contig2_A.roylei_Leaf 98.9 98.9 1241 0.0 size 1291
F1_Bulb CL6432.Contig3_F1_Bulb 100.0 100.0 1388 0.0 size 700
A.roylei_Bulb CL4303.Contig2_A.roylei_Bulb 98.9 98.9 1241 0.0 size 1275
DHA_Root Unigene33320_DHA_Root 100.0 100.0 1296 0.0 size 1283
F1_Root CL4547.Contig2_F1_Root 100.0 100.0 1441 0.0 size 757
A.roylei_Root CL7069.Contig2_A.roylei_Root 98.9 98.9 1241 0.0 size 1319
FFStem CL4490.Contig3_FFStem 95.4 95.4 1189 0.0 size 763
FF_5AStem CL6357.Contig2_FF_5AStem 96.0 96.0 1219 0.0 size 749
GI_kazusaEST TC7292 99.4 99.4 894 0.0 similar to UniRef100_Q7XC53 Cluster: Dual specificity phosphatase, catalytic domain containing protein, expressed; n=3; Oryza sativa|Rep: Dual specificity phosphatase, catalytic domain containing protein, expressed - Oryza sativa subsp. japonica (Rice), partial (54%)
A.fistulosum_Unigene AFU_04320 96.2 96.2 1098 0.0


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