Sequence

CL14.Contig4_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
40.97 48.50 10.28 16.09 101.23 5.29 11.67 33.59 33.37 11.93 18.42 24.63

Chromosome addition lines
FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 5.47 4.46 5.48 5.67 8.44 4.31 6.25 7.03 8.26 7.62
Root 4.96 4.82 4.76 5.79 6.76 2.3 6.05 5.24 10.56 5.68
Leaf 4.29 2.78 3.4 3.79 6.58 3.08 4.57 4.89 10.31 3.04
DHA_Fusarium
Control TA AC76
average SD average SD average SD
22.59 4.40 21.03 4.57 19.50 7.81

BLAST

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
TAIR AT5G42960.1 54.9 78.9 87.4 2e-18 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:17235184-17236478 FORWARD LENGTH=213
IRGSP Os03t0855600-02 51.4 66.7 75.5 7e-15 Similar to DANA2.
nr ref|NP_001242188.1| 67.6 83.1 105 6e-21 uncharacterized protein LOC100785739 [Glycine max] gi|255647198|gb|ACU24067.1| unknown [Glycine max]

Corresponding unigene

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
DHC_Leaf CL661.Contig4_DHC_Leaf 100.0 100.0 555 1e-158 size 899
DHA_Leaf Unigene24993_DHA_Leaf 100.0 100.0 549 1e-156 size 911
F1_Leaf Unigene19411_F1_Leaf 100.0 100.0 565 1e-161 size 928
A.roylei_Leaf Unigene26627_A.roylei_Leaf 97.8 97.8 327 2e-89 size 230
F1_Bulb CL2239.Contig2_F1_Bulb 100.0 100.0 527 1e-149 size 782
A.roylei_Bulb CL3583.Contig3_A.roylei_Bulb 97.8 97.8 327 2e-89 size 211
DHA_Root CL3235.Contig1_DHA_Root 100.0 100.0 565 1e-161 size 294
F1_Root Unigene20001_F1_Root 100.0 100.0 555 1e-158 size 939
A.roylei_Root CL255.Contig3_A.roylei_Root 97.2 97.2 379 1e-105 size 248
FFStem CL6739.Contig1_FFStem 95.7 95.7 444 1e-124 size 936
FF_5AStem CL7182.Contig1_FF_5AStem 96.4 96.4 460 1e-129 size 935
GI_kazusaEST onion_EST_c2348 81.8 81.8 113 2e-25
A.fistulosum_Unigene AFU_21179 95.4 95.4 414 1e-115


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