Sequence

CL13.Contig1_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
10.29 8.36 0.00 10.68 16.74 0.25 0.98 14.92 8.73 0.00 0.00 0.12

Chromosome addition lines
FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 0.08 0 0.47 0.15 0 0.23 0 0.08 3.87 0
Root 0.01 0.01 0.03 0.02 0 0.03 0 0 3.43 0
Leaf 0 0 0.08 0 0.08 0 0.19 0 0.63 0
DHA_Fusarium
Control TA AC76
average SD average SD average SD
6.62 1.40 4.32 0.48 4.39 0.85

BLAST

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
TAIR --No_Hits--
IRGSP --No_Hits--
nr emb|CAN67819.1| 37.7 63.2 95.5 4e-18 hypothetical protein VITISV_041315 [Vitis vinifera]

Corresponding unigene

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
DHC_Leaf Unigene22002_DHC_Leaf 88.9 88.9 345 9e-95 size 610
DHA_Leaf CL6814.Contig1_DHA_Leaf 91.9 91.9 432 1e-121 size 1270
F1_Leaf CL748.Contig5_F1_Leaf 98.8 98.8 607 1e-173 size 1061
A.roylei_Leaf Unigene29473_A.roylei_Leaf 85.0 85.0 165 2e-40 size 463
F1_Bulb CL2252.Contig1_F1_Bulb 98.8 98.8 607 1e-173 size 375
A.roylei_Bulb --No_Hits--
DHA_Root CL1861.Contig1_DHA_Root 98.8 98.8 607 1e-173 size 938
F1_Root CL5065.Contig1_F1_Root 98.8 98.8 607 1e-173 size 1203
A.roylei_Root CL6294.Contig1_A.roylei_Root 93.1 93.1 250 5e-66 size 176
FFStem --No_Hits--
FF_5AStem --No_Hits--
GI_kazusaEST --No_Hits--
A.fistulosum_Unigene AFU_13918 84.0 84.0 58.0 8e-08


Top