Sequence

CL11.Contig2_DHA_Bulb

Expression profile

RPKM ( Reads Per Kilobase of exon per Million mapped reads )

Reference Bulb Root Leaf Stem
DHA_Bulb F1 A.roylei DHA F1 A.roylei DHC DHA F1 A.roylei FF FF+5A
39.28 56.10 58.22 24.44 27.81 49.75 10.04 23.65 13.64 15.78 41.09 24.33

Chromosome addition lines
FF1A FF2A FF3A FF4A FF5A FF6A FF7A FF8A AA FF
Bulb 36.04 35.15 49.17 58.04 49.91 47.84 45.71 67.04 70.76 66.8
Root 32.9 35.75 32.31 36.63 30.98 28.97 36.18 37.17 30.24 48.9
Leaf 14.4 9.94 19.75 17.46 9.49 24.39 21.2 20.02 10.39 16.81
DHA_Fusarium
Control TA AC76
average SD average SD average SD
47.08 2.53 43.18 1.23 48.72 7.75

BLAST

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
TAIR AT3G51950.2 49.4 57.9 247 1e-65 | Symbols: | Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | chr3:19278244-19280407 REVERSE LENGTH=540
IRGSP Os07t0682400-03 56.1 62.6 212 4e-55 Nucleotide-binding, alpha-beta plait domain containing protein.
nr tpg|DAA64156.1| 46.5 54.0 287 4e-75 TPA: putative RNA-binding zinc finger family protein [Zea mays]

Corresponding unigene

DB AC Iden
(%)
Posi
(%)
Score Evalue Annotation
DHC_Leaf CL5601.Contig2_DHC_Leaf 99.7 99.7 1980 0.0 size 1150
DHA_Leaf CL428.Contig5_DHA_Leaf 100.0 100.0 2060 0.0 size 1125
F1_Leaf CL7001.Contig2_F1_Leaf 100.0 100.0 1986 0.0 size 1779
A.roylei_Leaf CL3089.Contig3_A.roylei_Leaf 98.6 98.6 1961 0.0 size 1869
F1_Bulb Unigene519_F1_Bulb 99.8 99.8 2135 0.0 size 1112
A.roylei_Bulb CL1427.Contig2_A.roylei_Bulb 98.7 98.7 2032 0.0 size 2043
DHA_Root Unigene31332_DHA_Root 100.0 100.0 2151 0.0 size 1252
F1_Root CL1793.Contig4_F1_Root 100.0 100.0 2151 0.0 size 2420
A.roylei_Root CL1282.Contig1_A.roylei_Root 98.7 98.7 2008 0.0 size 2322
FFStem CL4609.Contig3_FFStem 97.9 97.9 1953 0.0 size 1894
FF_5AStem CL5504.Contig1_FF_5AStem 97.8 97.8 1951 0.0 size 1910
GI_kazusaEST CF444169_e 90.1 90.1 137 6e-32
A.fistulosum_Unigene AFU_01013 85.3 85.3 228 1e-58


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